miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAGTAGACCGTATAGCGTACG

selected species: Mus musculus



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TAGTAGACCGTATAGCGTACG TATGTAACACGGTCCACTAAC up 4 0


Secondary structure

TCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCAT
--------------------ATAGTAGACCGTATAGCGTACG 	1775
--------------------ATAGTAGACCGTATAGCGTAC 	361
--------------------ATAGTAGACCGTATAGCGTA 	4
--------------------ATAGTAGACCGTATAGCGT 	11
---------------------TAGTAGACCGTATAGCGTACGC 	58
---------------------TAGTAGACCGTATAGCGTACG 	3905
---------------------TAGTAGACCGTATAGCGTA 	8
---------------------TAGTAGACCGTATAGCGTAC 	740
---------------------TAGTAGACCGTATAGCGTACGCTT 	1
----------------------AGTAGACCGTATAGCGTACG 	105
----------------------AGTAGACCGTATAGCGTACGCT 	6
----------------------AGTAGACCGTATAGCGTACGC 	23
----------------------AGTAGACCGTATAGCGTAC 	26
-----------------------GTAGACCGTATAGCGTACG 	34
-------------------------------------------------TGTGACGTATGTAACACGGT 	1
------------------------------------------------------CGTATGTAACACGGTCCACT 	1
-------------------------------------------------------GTATGTAACACGGTCCACTAA 	1
-------------------------------------------------------GTATGTAACACGGTCCACTAAC 	3
--------------------------------------------------------TATGTAACACGGTCCACTAA 	51
--------------------------------------------------------TATGTAACACGGTCCACTAACC 	46
--------------------------------------------------------TATGTAACACGGTCCACTAAC 	1142
--------------------------------------------------------TATGTAACACGGTCCACTA 	17
---------------------------------------------------------ATGTAACACGGTCCACTAAC 	11
----------------------------------------------------------TGTAACACGGTCCACTAAC 	2


Overlaps with: MNEST027170 MNEST027894 MNEST032062 MNEST033364
Overlaps with miRBase pre-miRNAs: ssc-mir-411 cfa-mir-411 ggo-mir-411 bta-mir-411a mml-mir-411 mmu-mir-411 rno-mir-411 eca-mir-411
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 TAGTAGACCGTATAGCGTACG TATGTAACACGGTCCACTAAC up 4 0


Secondary structure

TCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCAT
--------------------ATAGTAGACCGTATAGCGTACG 	409
--------------------ATAGTAGACCGTATAGCGTAC 	96
--------------------ATAGTAGACCGTATAGCGT 	3
--------------------ATAGTAGACCGTATAGCGTA 	1
---------------------TAGTAGACCGTATAGCGTACGC 	16
---------------------TAGTAGACCGTATAGCGTA 	2
---------------------TAGTAGACCGTATAGCGTACG 	888
---------------------TAGTAGACCGTATAGCGTAC 	197
---------------------TAGTAGACCGTATAGCGTACGCTT 	1
----------------------AGTAGACCGTATAGCGTACGC 	10
----------------------AGTAGACCGTATAGCGTACG 	17
----------------------AGTAGACCGTATAGCGTAC 	6
----------------------AGTAGACCGTATAGCGTACGCT 	4
-----------------------GTAGACCGTATAGCGTACG 	10
------------------------TAGACCGTATAGCGTACGC 	1
------------------------------------------CTTTATCTGTGACGTATGTAAC 	1
------------------------------------------------------CGTATGTAACACGGTCCACT 	1
--------------------------------------------------------TATGTAACACGGTCCACTAAC 	311
--------------------------------------------------------TATGTAACACGGTCCACTA 	2
--------------------------------------------------------TATGTAACACGGTCCACTAA 	17
--------------------------------------------------------TATGTAACACGGTCCACTAACC 	7
---------------------------------------------------------ATGTAACACGGTCCACTAAC 	4


Overlaps with: MNEST027170 MNEST027894 MNEST032062 MNEST033364
Overlaps with miRBase pre-miRNAs: ssc-mir-411 cfa-mir-411 ggo-mir-411 bta-mir-411a mml-mir-411 mmu-mir-411 rno-mir-411 eca-mir-411
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539855 TAGTAGACCGTATAGCGTACG TATGTAACACGGTCCACTAAC up 4 0


Secondary structure

TCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCAT
--------------------ATAGTAGACCGTATAGCGTACG 	19
--------------------ATAGTAGACCGTATAGCGTAC 	9
--------------------ATAGTAGACCGTATAGCGTA 	4
---------------------TAGTAGACCGTATAGCGTAC 	19
---------------------TAGTAGACCGTATAGCGTACG 	36
---------------------TAGTAGACCGTATAGCGTACGC 	1
---------------------TAGTAGACCGTATAGCGTA 	3
--------------------------------------------------------TATGTAACACGGTCCACTAAC 	2
--------------------------------------------------------TATGTAACACGGTCCACTAA 	6
--------------------------------------------------------TATGTAACACGGTCCACTA 	4


Overlaps with: MNEST027170 MNEST027894 MNEST032062 MNEST033364
Overlaps with miRBase pre-miRNAs: ssc-mir-411 cfa-mir-411 ggo-mir-411 bta-mir-411a mml-mir-411 mmu-mir-411 rno-mir-411 eca-mir-411
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527276 TAGTAGACCGTATAGCGTACG TATGTAACACGGTCCACTAAC up 4 0


Secondary structure

TCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCAT
-CTGTGTGGTACTTGGAGAGA 	1
-------------------GATAGTAGACCGTATAGCGTACG 	2
-------------------GATAGTAGACCGTATAGCGTAC 	2
--------------------ATAGTAGACCGTATAGCGTACG 	1400
--------------------ATAGTAGACCGTATAGCGTAC 	258
--------------------ATAGTAGACCGTATAGCGTACGC 	3
--------------------ATAGTAGACCGTATAGCGT 	10
--------------------ATAGTAGACCGTATAGCGTA 	4
---------------------TAGTAGACCGTATAGCGTACGC 	53
---------------------TAGTAGACCGTATAGCGTA 	5
---------------------TAGTAGACCGTATAGCGTACG 	2841
---------------------TAGTAGACCGTATAGCGTAC 	573
----------------------AGTAGACCGTATAGCGTACGC 	25
----------------------AGTAGACCGTATAGCGTACG 	88
----------------------AGTAGACCGTATAGCGTAC 	14
----------------------AGTAGACCGTATAGCGTACGCT 	12
-----------------------GTAGACCGTATAGCGTACG 	19
-------------------------------------------------TGTGACGTATGTAACACGGTCCA 	1
------------------------------------------------------CGTATGTAACACGGTCCACTAA 	2
-------------------------------------------------------GTATGTAACACGGTCCACTAAC 	2
--------------------------------------------------------TATGTAACACGGTCCACTAAC 	1130
--------------------------------------------------------TATGTAACACGGTCCACTA 	8
--------------------------------------------------------TATGTAACACGGTCCACTAA 	56
--------------------------------------------------------TATGTAACACGGTCCACTAACC 	34
---------------------------------------------------------ATGTAACACGGTCCACTAAC 	4


Overlaps with: MNEST027170 MNEST027894 MNEST032062 MNEST033364
Overlaps with miRBase pre-miRNAs: ssc-mir-411 cfa-mir-411 ggo-mir-411 bta-mir-411a mml-mir-411 mmu-mir-411 rno-mir-411 eca-mir-411
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539869 ATAGTAGACCGTATAGCGTACG TATGTAACACGGTCCACTAACC up 5 0


Secondary structure

CTCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCATC
--------------------GATAGTAGACCGTATAGCGTAC 	6
--------------------GATAGTAGACCGTATAGCGT 	1
---------------------ATAGTAGACCGTATAGCGTACG 	597
---------------------ATAGTAGACCGTATAGCGTACGC 	1
---------------------ATAGTAGACCGTATAGCGTAC 	496
---------------------ATAGTAGACCGTATAGCGTA 	84
---------------------ATAGTAGACCGTATAGCGT 	10
----------------------TAGTAGACCGTATAGCGTAC 	148
----------------------TAGTAGACCGTATAGCGTACGCTT 	2
----------------------TAGTAGACCGTATAGCGTACGC 	1
----------------------TAGTAGACCGTATAGCGTACG 	191
----------------------TAGTAGACCGTATAGCGTA 	5
-----------------------AGTAGACCGTATAGCGTACGCT 	3
-----------------------AGTAGACCGTATAGCGTACGC 	1
--------------------------------------------------TGTGACGTATGTAACACGGTC 	1
-------------------------------------------------------CGTATGTAACACGGTCCACTA 	1
-------------------------------------------------------CGTATGTAACACGGTCCACTAA 	2
---------------------------------------------------------TATGTAACACGGTCCACTAAC 	52
---------------------------------------------------------TATGTAACACGGTCCACTAACC 	5
---------------------------------------------------------TATGTAACACGGTCCACTAA 	25
---------------------------------------------------------TATGTAACACGGTCCACTA 	5


Overlaps with: MNEST027170 MNEST027894 MNEST032062 MNEST033364
Overlaps with miRBase pre-miRNAs: ssc-mir-411 cfa-mir-411 bta-mir-411a mml-mir-411 mmu-mir-411 rno-mir-411 eca-mir-411
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM527277-2110 TAGTAGACCGTATAGCGTACG TATGTAACACGGTCCACTAAC up 4 0


Secondary structure

TCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCAT
-------------------GATAGTAGACCGTATAGCGTAC 	5
-------------------GATAGTAGACCGTATAGCGT 	2
-------------------GATAGTAGACCGTATAGCGTACG 	2
--------------------ATAGTAGACCGTATAGCGTACGC 	1
--------------------ATAGTAGACCGTATAGCGTACG 	1369
--------------------ATAGTAGACCGTATAGCGTAC 	349
--------------------ATAGTAGACCGTATAGCGTA 	3
--------------------ATAGTAGACCGTATAGCGT 	21
---------------------TAGTAGACCGTATAGCGTACGC 	82
---------------------TAGTAGACCGTATAGCGTACGCTTT 	1
---------------------TAGTAGACCGTATAGCGTACG 	4282
---------------------TAGTAGACCGTATAGCGTA 	13
---------------------TAGTAGACCGTATAGCGTAC 	1058
---------------------TAGTAGACCGTATAGCGTACGCTT 	1
----------------------AGTAGACCGTATAGCGTACG 	76
----------------------AGTAGACCGTATAGCGTACGCT 	5
----------------------AGTAGACCGTATAGCGTACGC 	48
----------------------AGTAGACCGTATAGCGTAC 	18
-----------------------GTAGACCGTATAGCGTACGC 	1
-----------------------GTAGACCGTATAGCGTACG 	18
-------------------------------------------------TGTGACGTATGTAACACGGTCC 	1
-------------------------------------------------------GTATGTAACACGGTCCACTAAC 	6
--------------------------------------------------------TATGTAACACGGTCCACTAA 	76
--------------------------------------------------------TATGTAACACGGTCCACTA 	22
--------------------------------------------------------TATGTAACACGGTCCACTAACC 	41
--------------------------------------------------------TATGTAACACGGTCCACTAAC 	1385
---------------------------------------------------------ATGTAACACGGTCCACTAAC 	3
-----------------------------------------------------------GTAACACGGTCCACTAACC 	1


Overlaps with: MNEST027170 MNEST027894 MNEST032062 MNEST033364
Overlaps with miRBase pre-miRNAs: ssc-mir-411 cfa-mir-411 ggo-mir-411 bta-mir-411a mml-mir-411 mmu-mir-411 rno-mir-411 eca-mir-411
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539871 ATAGTAGACCGTATAGCGTACG TATGTAACACGGTCCACTAACC up 5 0


Secondary structure

CTCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCATC
---------------------ATAGTAGACCGTATAGCGTACG 	6
---------------------ATAGTAGACCGTATAGCGTAC 	1
----------------------TAGTAGACCGTATAGCGTAC 	1


Overlaps with: MNEST027170 MNEST027894 MNEST032062 MNEST033364
Overlaps with miRBase pre-miRNAs: ssc-mir-411 cfa-mir-411 bta-mir-411a mml-mir-411 mmu-mir-411 rno-mir-411 eca-mir-411
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539878 ATAGTAGACCGTATAGCGTACG TATGTAACACGGTCCACTAACC up 5 0


Secondary structure

CTCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCATC
---------------------ATAGTAGACCGTATAGCGTACG 	107
---------------------ATAGTAGACCGTATAGCGTAC 	62
---------------------ATAGTAGACCGTATAGCGTA 	16
---------------------ATAGTAGACCGTATAGCGT 	7
----------------------TAGTAGACCGTATAGCGTAC 	32
----------------------TAGTAGACCGTATAGCGTACG 	28
----------------------TAGTAGACCGTATAGCGTA 	8
-----------------------AGTAGACCGTATAGCGTACG 	1
---------------------------------------------------------TATGTAACACGGTCCACTAAC 	11
---------------------------------------------------------TATGTAACACGGTCCACTAA 	1
---------------------------------------------------------TATGTAACACGGTCCACTA 	1


Overlaps with: MNEST027170 MNEST027894 MNEST032062 MNEST033364
Overlaps with miRBase pre-miRNAs: ssc-mir-411 cfa-mir-411 bta-mir-411a mml-mir-411 mmu-mir-411 rno-mir-411 eca-mir-411
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM527279-2112 TAGTAGACCGTATAGCGTACG TATGTAACACGGTCCACTAAC up 4 0


Secondary structure

TCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCAT
-------------------GATAGTAGACCGTATAGCGTACG 	4
-------------------GATAGTAGACCGTATAGCGTAC 	1
--------------------ATAGTAGACCGTATAGCGTACGC 	1
--------------------ATAGTAGACCGTATAGCGTACG 	2324
--------------------ATAGTAGACCGTATAGCGTAC 	458
--------------------ATAGTAGACCGTATAGCGT 	17
--------------------ATAGTAGACCGTATAGCGTA 	8
---------------------TAGTAGACCGTATAGCGTACGC 	87
---------------------TAGTAGACCGTATAGCGTACG 	5117
---------------------TAGTAGACCGTATAGCGTA 	9
---------------------TAGTAGACCGTATAGCGTAC 	894
---------------------TAGTAGACCGTATAGCGTACGCTT 	1
----------------------AGTAGACCGTATAGCGTACG 	93
----------------------AGTAGACCGTATAGCGTACGCTT 	2
----------------------AGTAGACCGTATAGCGTACGCT 	14
----------------------AGTAGACCGTATAGCGTACGC 	48
----------------------AGTAGACCGTATAGCGTAC 	26
-----------------------GTAGACCGTATAGCGTACGC 	1
-----------------------GTAGACCGTATAGCGTACG 	38
------------------------------------------------------CGTATGTAACACGGTCCACTAA 	2
------------------------------------------------------CGTATGTAACACGGTCCACTA 	1
-------------------------------------------------------GTATGTAACACGGTCCACTAA 	1
-------------------------------------------------------GTATGTAACACGGTCCACTA 	1
-------------------------------------------------------GTATGTAACACGGTCCACTAAC 	5
--------------------------------------------------------TATGTAACACGGTCCACTAA 	108
--------------------------------------------------------TATGTAACACGGTCCACTAACC 	57
--------------------------------------------------------TATGTAACACGGTCCACTAAC 	2151
--------------------------------------------------------TATGTAACACGGTCCACTA 	32
---------------------------------------------------------ATGTAACACGGTCCACTAACC 	1
---------------------------------------------------------ATGTAACACGGTCCACTAAC 	11


Overlaps with: MNEST027170 MNEST027894 MNEST032062 MNEST033364
Overlaps with miRBase pre-miRNAs: ssc-mir-411 cfa-mir-411 ggo-mir-411 bta-mir-411a mml-mir-411 mmu-mir-411 rno-mir-411 eca-mir-411
HuntMi prediction: true miRNA