miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TAGTGCAATTTGTTGTAGCTTG

selected species: Ciona intestinalis

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Ciona intestinalis	GSM343283-14443	TAGTGCAATTTGTTGTAGCTTG	AGCTCAATTCAATTGCACTGCT	up	1	2

Secondary structure

GCCATAAAACGCACGCCAGGTTAGTGCAATTTGTTGTAGCTTGCTGTTAATTCAAGCTCAATTCAATTGCACTGCTCTGTTACTGCGTACAAAC
---------------------TAGTGCAATTTGTTGTAGCTTGC 	561
---------------------TAGTGCAATTTGTTGTAGCTTG 	3133
---------------------TAGTGCAATTTGTTGTAGCTT 	652
---------------------TAGTGCAATTTGTTGTAGCT 	19
---------------------TAGTGCAATTTGTTGTAGC 	38
----------------------AGTGCAATTTGTTGTAGCTTGC 	1
----------------------AGTGCAATTTGTTGTAGCTTG 	1

Overlaps with: MNEST025311 MNEST025312
Overlaps with miRBase pre-miRNAs: cin-mir-4220
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Ciona intestinalis	GSM343282-14442	TAGTGCAATTTGTTGTAGCTTG	AGCTCAATTCAATTGCACTGCT	up	1	2

Secondary structure

GCCATAAAACGCACGCCAGGTTAGTGCAATTTGTTGTAGCTTGCTGTTAATTCAAGCTCAATTCAATTGCACTGCTCTGTTACTGCGTACAAAC
-CCATAAAACGCACGCCAGG 	3
--CATAAAACGCACGCCAGGT 	1
--------------------TTAGTGCAATTTGTTGTAGCTT 	2
---------------------TAGTGCAATTTGTTGTAGCTTG 	4111
---------------------TAGTGCAATTTGTTGTAGCTT 	1841
---------------------TAGTGCAATTTGTTGTAGCT 	51
---------------------TAGTGCAATTTGTTGTAGC 	89
-----------------------GTGCAATTTGTTGTAGCTTGC 	1
------------------------TGCAATTTGTTGTAGCTTGCTG 	1

Overlaps with: MNEST025311 MNEST025312
Overlaps with miRBase pre-miRNAs: cin-mir-4220
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Ciona intestinalis	GSM343284-14444	TAGTGCAATTTGTTGTAGCTTG	AGCTCAATTCAATTGCACTGCT	up	1	2

Secondary structure

GCCATAAAACGCACGCCAGGTTAGTGCAATTTGTTGTAGCTTGCTGTTAATTCAAGCTCAATTCAATTGCACTGCTCTGTTACTGCGTACAAAC
-CCATAAAACGCACGCCAGGT 	1
-CCATAAAACGCACGCCAGG 	1
--CATAAAACGCACGCCAGGT 	1
---------------------TAGTGCAATTTGTTGTAGCTTGC 	105
---------------------TAGTGCAATTTGTTGTAGCTTG 	1445
---------------------TAGTGCAATTTGTTGTAGCTT 	50
---------------------TAGTGCAATTTGTTGTAGCT 	10
---------------------TAGTGCAATTTGTTGTAGC 	11
----------------------AGTGCAATTTGTTGTAGCTTGCT 	1
------------------------------------------------------AGCTCAATTCAATTGCACTGCT 	1

Overlaps with: MNEST025311 MNEST025312
Overlaps with miRBase pre-miRNAs: cin-mir-4220
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Ciona intestinalis	GSM343285	TAGTGCAATTTGTTGTAGCTTG	AGCTCAATTCAATTGCACTGCT	up	1	2

Secondary structure

GCCATAAAACGCACGCCAGGTTAGTGCAATTTGTTGTAGCTTGCTGTTAATTCAAGCTCAATTCAATTGCACTGCTCTGTTACTGCGTACAAAC
---------------------TAGTGCAATTTGTTGTAGCTTGC 	111
---------------------TAGTGCAATTTGTTGTAGCTTG 	1800
---------------------TAGTGCAATTTGTTGTAGCTT 	53
---------------------TAGTGCAATTTGTTGTAGCT 	92
---------------------TAGTGCAATTTGTTGTAGC 	14
----------------------AGTGCAATTTGTTGTAGCTTGC 	1
----------------------AGTGCAATTTGTTGTAGCTT 	1
-----------------------GTGCAATTTGTTGTAGCTTGCT 	1
-------------------------GCAATTTGTTGTAGCTTGCTG 	1

Overlaps with: MNEST025311 MNEST025312
Overlaps with miRBase pre-miRNAs: cin-mir-4220
HuntMi prediction: true miRNA