miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TATACAAGGGCAAGCTCTCTGT

selected species: Mus musculus

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM527274-2107	TATACAAGGGCAAGCTCTCTGT	AGCGAGGTTGCCCTTTGTATATT	down	3	1

Secondary structure

CCATGCTATTGTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAACCTTATCTTG
----------------------AAGCGAGGTTGCCCTTTGTATAT 	1
----------------------AAGCGAGGTTGCCCTTTGTATATT 	1
-----------------------AGCGAGGTTGCCCTTTGTATATTC 	2
-----------------------AGCGAGGTTGCCCTTTGTATAT 	24
-----------------------AGCGAGGTTGCCCTTTGTA 	4
-----------------------AGCGAGGTTGCCCTTTGTATATT 	44
-----------------------AGCGAGGTTGCCCTTTGTAT 	3
-----------------------AGCGAGGTTGCCCTTTGTATA 	2
---------------------------AGGTTGCCCTTTGTATATT 	3
---------------------------AGGTTGCCCTTTGTATATTCG 	1
----------------------------GGTTGCCCTTTGTATATTC 	1
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTGT 	252
---------------------------------------------------------------ATATACAAGGGCAAGCTCT 	1
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTG 	7
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCT 	15
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTGT 	24242
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTG 	109
----------------------------------------------------------------TATACAAGGGCAAGCTCTCT 	49
----------------------------------------------------------------TATACAAGGGCAAGCTCTC 	11
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTGT 	640
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTG 	4
------------------------------------------------------------------TACAAGGGCAAGCTCTCTGT 	15
-------------------------------------------------------------------ACAAGGGCAAGCTCTCTGT 	2235

Overlaps with: MNEST030361
Overlaps with miRBase pre-miRNAs: mmu-mir-381 mml-mir-381 cgr-mir-381 ppy-mir-381 ptr-mir-381 hsa-mir-381
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM527280	TATACAAGGGCAAGCTCTCTGT	AGCGAGGTTGCCCTTTGTATATT	down	3	1

Secondary structure

CCATGCTATTGTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAACCTTATCTTG
----------------------AAGCGAGGTTGCCCTTTGTATATT 	1
-----------------------AGCGAGGTTGCCCTTTGTAT 	1
-----------------------AGCGAGGTTGCCCTTTGTATATT 	6
-----------------------AGCGAGGTTGCCCTTTGTATAT 	2
--------------------------------------------------------------AATATACAAGGGCAAGCTCT 	1
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTG 	2
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTGT 	67
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCT 	4
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTGT 	6300
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTG 	42
----------------------------------------------------------------TATACAAGGGCAAGCTCTCT 	31
----------------------------------------------------------------TATACAAGGGCAAGCTCTC 	2
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTGT 	161
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTG 	1
------------------------------------------------------------------TACAAGGGCAAGCTCTCTGT 	3
-------------------------------------------------------------------ACAAGGGCAAGCTCTCTGT 	562

Overlaps with: MNEST030361
Overlaps with miRBase pre-miRNAs: mmu-mir-381 mml-mir-381 cgr-mir-381 ppy-mir-381 ptr-mir-381 hsa-mir-381
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539855	TATACAAGGGCAAGCTCTCTGT	AGCGAGGTTGCCCTTTGTATATT	down	3	1

Secondary structure

CCATGCTATTGTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAACCTTATCTTG
-----------------------AGCGAGGTTGCCCTTTGTATA 	1
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTG 	1
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTGT 	10
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTG 	1
----------------------------------------------------------------TATACAAGGGCAAGCTCTCT 	1

Overlaps with: MNEST030361
Overlaps with miRBase pre-miRNAs: mmu-mir-381 mml-mir-381 cgr-mir-381 ppy-mir-381 ptr-mir-381 hsa-mir-381
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM527276	TATACAAGGGCAAGCTCTCTGT	AGCGAGGTTGCCCTTTGTATATT	down	3	1

Secondary structure

CCATGCTATTGTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAACCTTATCTTG
-----------------------AGCGAGGTTGCCCTTTGTATATTC 	1
-----------------------AGCGAGGTTGCCCTTTGTAT 	4
-----------------------AGCGAGGTTGCCCTTTGTATATT 	33
-----------------------AGCGAGGTTGCCCTTTGTATAT 	11
-----------------------AGCGAGGTTGCCCTTTGTA 	1
-------------------------CGAGGTTGCCCTTTGTATATT 	1
-------------------------CGAGGTTGCCCTTTGTATATTCG 	1
---------------------------AGGTTGCCCTTTGTATATT 	3
----------------------------GGTTGCCCTTTGTATATTCG 	1
----------------------------GGTTGCCCTTTGTATATTC 	1
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTG 	6
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTGT 	222
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCT 	10
---------------------------------------------------------------ATATACAAGGGCAAGCTCTC 	1
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTGT 	22013
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTG 	99
----------------------------------------------------------------TATACAAGGGCAAGCTCTCT 	66
----------------------------------------------------------------TATACAAGGGCAAGCTCTC 	4
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTGT 	552
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTG 	2
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCT 	1
-------------------------------------------------------------------ACAAGGGCAAGCTCTCTGT 	2040

Overlaps with: MNEST030361
Overlaps with miRBase pre-miRNAs: mmu-mir-381 mml-mir-381 cgr-mir-381 ppy-mir-381 ptr-mir-381 hsa-mir-381
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM527277-2110	TATACAAGGGCAAGCTCTCTGT	AGCGAGGTTGCCCTTTGTATATT	down	3	1

Secondary structure

CCATGCTATTGTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAACCTTATCTTG
-----------------------AGCGAGGTTGCCCTTTGTATATTC 	2
-----------------------AGCGAGGTTGCCCTTTGTATATT 	32
-----------------------AGCGAGGTTGCCCTTTGTATAT 	19
-----------------------AGCGAGGTTGCCCTTTGTA 	3
-----------------------AGCGAGGTTGCCCTTTGTAT 	6
------------------------GCGAGGTTGCCCTTTGTATATT 	1
-------------------------CGAGGTTGCCCTTTGTATATTCG 	2
----------------------------GGTTGCCCTTTGTATATTC 	1
----------------------------GGTTGCCCTTTGTATATTCG 	1
-----------------------------GTTGCCCTTTGTATATTCG 	2
---------------------------------------------TCGGTTTATTGACATGGAA 	1
------------------------------------------------------------GGAATATACAAGGGCAAGCTC 	1
--------------------------------------------------------------AATATACAAGGGCAAGCTCTC 	1
--------------------------------------------------------------AATATACAAGGGCAAGCTCTCT 	1
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTG 	7
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTGT 	229
---------------------------------------------------------------ATATACAAGGGCAAGCTCT 	1
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCT 	18
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTGT 	30500
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTG 	232
----------------------------------------------------------------TATACAAGGGCAAGCTCTC 	9
----------------------------------------------------------------TATACAAGGGCAAGCTCTCT 	155
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTGT 	139
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTG 	1
------------------------------------------------------------------TACAAGGGCAAGCTCTCTGT 	7
-------------------------------------------------------------------ACAAGGGCAAGCTCTCTGT 	2440

Overlaps with: MNEST030361
Overlaps with miRBase pre-miRNAs: mmu-mir-381 mml-mir-381 cgr-mir-381 ppy-mir-381 ptr-mir-381 hsa-mir-381
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM539867	TATACAAGGGCAAGCTCTCTGT	AGCGAGGTTGCCCTTTGTATATT	down	3	1

Secondary structure

CCATGCTATTGTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAACCTTATCTTG
-----------------------AGCGAGGTTGCCCTTTGTATATT 	2
-----------------------AGCGAGGTTGCCCTTTGTAT 	1
--------------------------------------------------------------AATATACAAGGGCAAGCTCT 	1
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTGT 	12
---------------------------------------------------------------ATATACAAGGGCAAGCTCTC 	5
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTG 	7
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCT 	9
----------------------------------------------------------------TATACAAGGGCAAGCTCTC 	1
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTGT 	47
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTG 	6
----------------------------------------------------------------TATACAAGGGCAAGCTCTCT 	3
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTGTGA 	1
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTGT 	13
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCT 	1

Overlaps with: MNEST030361
Overlaps with miRBase pre-miRNAs: mmu-mir-381 mml-mir-381 cgr-mir-381 ppy-mir-381 ptr-mir-381 hsa-mir-381
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539854	TATACAAGGGCAAGCTCTCTGT	AGCGAGGTTGCCCTTTGTATATT	down	3	1

Secondary structure

CCATGCTATTGTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAACCTTATCTTG
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTGT 	2
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTG 	2
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCT 	2
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTG 	5
----------------------------------------------------------------TATACAAGGGCAAGCTCTCT 	8
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTGT 	27
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTGT 	2
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTG 	1

Overlaps with: MNEST030361
Overlaps with miRBase pre-miRNAs: mmu-mir-381 mml-mir-381 cgr-mir-381 ppy-mir-381 ptr-mir-381 hsa-mir-381
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM527279-2112	TATACAAGGGCAAGCTCTCTGT	AGCGAGGTTGCCCTTTGTATATT	down	3	1

Secondary structure

CCATGCTATTGTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAACCTTATCTTG
-----------------------AGCGAGGTTGCCCTTTGTATATTC 	4
-----------------------AGCGAGGTTGCCCTTTGTATAT 	21
-----------------------AGCGAGGTTGCCCTTTGTA 	1
-----------------------AGCGAGGTTGCCCTTTGTATATT 	48
-----------------------AGCGAGGTTGCCCTTTGTAT 	9
-------------------------CGAGGTTGCCCTTTGTATATTCG 	4
-------------------------CGAGGTTGCCCTTTGTATATTC 	1
---------------------------AGGTTGCCCTTTGTATATT 	6
---------------------------AGGTTGCCCTTTGTATATTC 	2
--------------------------------------------------------------AATATACAAGGGCAAGCTCTCT 	1
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTGT 	396
---------------------------------------------------------------ATATACAAGGGCAAGCTCT 	2
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCTG 	6
---------------------------------------------------------------ATATACAAGGGCAAGCTCTCT 	11
---------------------------------------------------------------ATATACAAGGGCAAGCTCTC 	1
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTGT 	36002
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTG 	179
----------------------------------------------------------------TATACAAGGGCAAGCTCTCT 	96
----------------------------------------------------------------TATACAAGGGCAAGCTCTC 	7
----------------------------------------------------------------TATACAAGGGCAAGCTCTCTGTGA 	1
-----------------------------------------------------------------ATACAAGGGCAAGCTCTCTGT 	563
------------------------------------------------------------------TACAAGGGCAAGCTCTCTGT 	18
-------------------------------------------------------------------ACAAGGGCAAGCTCTCTGT 	3423

Overlaps with: MNEST030361
Overlaps with miRBase pre-miRNAs: mmu-mir-381 mml-mir-381 cgr-mir-381 ppy-mir-381 ptr-mir-381 hsa-mir-381
HuntMi prediction: true miRNA