miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATCACAGCCATTTTGACGAGT

selected species: Drosophila melanogaster



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM360257-14325 TATCACAGCCATTTTGACGAGT GCGTCAAAATGACTGTGAGCTATG down 2 2


Secondary structure

TCTACCTCTGCTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGTGGATTTGACTTCATATCACAGCCATTTTGACGAGTTTGTTGGACAGCCAGCCTC
----------------------GCGTCAAAATGACTGTGAGCTATG 	1
----------------------GCGTCAAAATGACTGTGAGCT 	1
------------------------------------------------------------TATCACAGCCATTTTGACGAGTT 	51
------------------------------------------------------------TATCACAGCCATTTTGACGAGT 	146
------------------------------------------------------------TATCACAGCCATTTTGACGAG 	26
------------------------------------------------------------TATCACAGCCATTTTGACGA 	5
------------------------------------------------------------TATCACAGCCATTTTGACG 	2
--------------------------------------------------------------TCACAGCCATTTTGACGAGTT 	2
--------------------------------------------------------------TCACAGCCATTTTGACGAG 	2
--------------------------------------------------------------TCACAGCCATTTTGACGAGT 	1
---------------------------------------------------------------CACAGCCATTTTGACGAGT 	1
----------------------------------------------------------------ACAGCCATTTTGACGAGTT 	1


Overlaps with: MNEST036363 MNEST036364
Overlaps with miRBase pre-miRNAs: dme-mir-13b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM322543-14323 TATCACAGCCATTTTGACGAGT GCGTCAAAATGACTGTGAGCTATG down 2 2


Secondary structure

TCTACCTCTGCTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGTGGATTTGACTTCATATCACAGCCATTTTGACGAGTTTGTTGGACAGCCAGCCTC
----------------------GCGTCAAAATGACTGTGAGCTATG 	46
----------------------GCGTCAAAATGACTGTGAGCTAT 	23
----------------------GCGTCAAAATGACTGTGAGCTA 	11
-----------------------------------------------------------ATATCACAGCCATTTTGACGA 	5
-----------------------------------------------------------ATATCACAGCCATTTTGACGAGTT 	2
-----------------------------------------------------------ATATCACAGCCATTTTGACGAGT 	21
-----------------------------------------------------------ATATCACAGCCATTTTGACGAG 	3
------------------------------------------------------------TATCACAGCCATTTTGACGAGTT 	4103
------------------------------------------------------------TATCACAGCCATTTTGACGAGT 	11984
------------------------------------------------------------TATCACAGCCATTTTGACGAGTTT 	43
------------------------------------------------------------TATCACAGCCATTTTGACG 	31
------------------------------------------------------------TATCACAGCCATTTTGACGAG 	2619
------------------------------------------------------------TATCACAGCCATTTTGACGA 	100
-------------------------------------------------------------ATCACAGCCATTTTGACGAGTT 	15
-------------------------------------------------------------ATCACAGCCATTTTGACGAGT 	41
--------------------------------------------------------------TCACAGCCATTTTGACGAGTT 	16
--------------------------------------------------------------TCACAGCCATTTTGACGAG 	21
--------------------------------------------------------------TCACAGCCATTTTGACGAGT 	70
---------------------------------------------------------------CACAGCCATTTTGACGAGT 	5


Overlaps with: MNEST036363 MNEST036364
Overlaps with miRBase pre-miRNAs: dme-mir-13b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated TATCACAGCCATTTTGACGAGT GCGTCAAAATGACTGTGAGCTATG down 2 2


Secondary structure

TCTACCTCTGCTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGTGGATTTGACTTCATATCACAGCCATTTTGACGAGTTTGTTGGACAGCCAGCCTC
---ACCTCTGCTGTCTATTAAC 	1
----------------------GCGTCAAAATGACTGTGAGCTATG 	25
----------------------GCGTCAAAATGACTGTGAGCTAT 	4
----------------------GCGTCAAAATGACTGTGAGCT 	3
------------------------GTCAAAATGACTGTGAGCTATG 	1
-----------------------------------------------------------ATATCACAGCCATTTTGACGA 	1
-----------------------------------------------------------ATATCACAGCCATTTTGACG 	2
-----------------------------------------------------------ATATCACAGCCATTTTGACGAGTT 	2
-----------------------------------------------------------ATATCACAGCCATTTTGACGAGT 	9
------------------------------------------------------------TATCACAGCCATTTTGACGAGTT 	8048
------------------------------------------------------------TATCACAGCCATTTTGACGAGT 	9746
------------------------------------------------------------TATCACAGCCATTTTGACGAGTTT 	250
------------------------------------------------------------TATCACAGCCATTTTGACGAG 	1237
------------------------------------------------------------TATCACAGCCATTTTGACG 	24
------------------------------------------------------------TATCACAGCCATTTTGACGA 	165
-------------------------------------------------------------ATCACAGCCATTTTGACGAGTT 	23
-------------------------------------------------------------ATCACAGCCATTTTGACGA 	1
-------------------------------------------------------------ATCACAGCCATTTTGACGAGT 	19
-------------------------------------------------------------ATCACAGCCATTTTGACGAG 	4
--------------------------------------------------------------TCACAGCCATTTTGACGAGTT 	6
--------------------------------------------------------------TCACAGCCATTTTGACGAGT 	8
---------------------------------------------------------------CACAGCCATTTTGACGAGT 	5
---------------------------------------------------------------CACAGCCATTTTGACGAGTT 	4
----------------------------------------------------------------ACAGCCATTTTGACGAGTTT 	10
----------------------------------------------------------------ACAGCCATTTTGACGAGTT 	285
-----------------------------------------------------------------CAGCCATTTTGACGAGTTT 	1


Overlaps with: MNEST036363 MNEST036364
Overlaps with miRBase pre-miRNAs: dme-mir-13b-2
HuntMi prediction: true miRNA