miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TATCACAGCCATTTTGATGAGT

selected species: Drosophila melanogaster



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TATCACAGCCATTTTGATGAGT TCCTCAAAGGGTTGTGAAATG down 2 1


Secondary structure

CAAGCCATAATTCTTACGTAACTCCTCAAAGGGTTGTGAAATGTCGACTATTATCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAATCGCGGCAG
----------------------TCCTCAAAGGGTTGTGAAATG 	1
-------------------------------------------------------------TATCACAGCCATTTTGATGAG 	24
-------------------------------------------------------------TATCACAGCCATTTTGATG 	1
-------------------------------------------------------------TATCACAGCCATTTTGATGAGTTT 	4
-------------------------------------------------------------TATCACAGCCATTTTGATGAGTT 	159
-------------------------------------------------------------TATCACAGCCATTTTGATGAGT 	185
--------------------------------------------------------------ATCACAGCCATTTTGATGAGT 	1
---------------------------------------------------------------TCACAGCCATTTTGATGAGT 	1
-----------------------------------------------------------------ACAGCCATTTTGATGAGTT 	1

Overlaps with: MNEST036172 MNEST036359 MNEST036360 MNEST037132 MNEST037208
Overlaps with miRBase pre-miRNAs: dse-mir-13a dme-mir-13a der-mir-13a dsi-mir-13a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399106-16287 TATCACAGCCATTTTGATGAGT TCCTCAAAGGGTTGTGAAATG down 2 1


Secondary structure

CAAGCCATAATTCTTACGTAACTCCTCAAAGGGTTGTGAAATGTCGACTATTATCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAATCGCGGCAG
-------------------------------------------------------------TATCACAGCCATTTTGATGAG 	2
-------------------------------------------------------------TATCACAGCCATTTTGATGAGTT 	26
-------------------------------------------------------------TATCACAGCCATTTTGATGAGT 	29
-----------------------------------------------------------------ACAGCCATTTTGATGAGTT 	1

Overlaps with: MNEST036172 MNEST036359 MNEST036360 MNEST037132 MNEST037208
Overlaps with miRBase pre-miRNAs: dse-mir-13a dme-mir-13a der-mir-13a dsi-mir-13a
HuntMi prediction: true miRNA