miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TATGAGAGTATTATAAGTCAC

selected species: Arabidopsis thaliana

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM415786-5994	TATGAGAGTATTATAAGTCAC	GACTTATGATAATCTCATGAA	up	1	0

Secondary structure

GGTAAATTCTTTAACTGTTCTGAGGATTGTTTATGAGAGTATTATAAGTCACTACATTTGGTAAGCAAAGTGTTGTTTCTCAAACGAAGTGACTTATGATAATCTCATGAATGGATTTTGCAACTCTTAAAGAGAGCAT
-------------------------------TATGAGAGTATTATAAGTCAC 	8
-------------------------------TATGAGAGTATTATAAGTCA 	2

Overlaps with: MNEST040098 MNEST047021
Overlaps with miRBase pre-miRNAs: ath-MIR400
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM415785	TATGAGAGTATTATAAGTCAC	GACTTATGATAATCTCATGAA	up	1	0

Secondary structure

GGTAAATTCTTTAACTGTTCTGAGGATTGTTTATGAGAGTATTATAAGTCACTACATTTGGTAAGCAAAGTGTTGTTTCTCAAACGAAGTGACTTATGATAATCTCATGAATGGATTTTGCAACTCTTAAAGAGAGCAT
-------------------------------TATGAGAGTATTATAAGTCAC 	20

Overlaps with: MNEST040098 MNEST047021
Overlaps with miRBase pre-miRNAs: ath-MIR400
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM366866	TATGAGAGTATTATAAGTCAC	GACTTATGATAATCTCATGAA	up	1	0

Secondary structure

GGTAAATTCTTTAACTGTTCTGAGGATTGTTTATGAGAGTATTATAAGTCACTACATTTGGTAAGCAAAGTGTTGTTTCTCAAACGAAGTGACTTATGATAATCTCATGAATGGATTTTGCAACTCTTAAAGAGAGCAT
-------------------------------TATGAGAGTATTATAAGTCAC 	21
--------------------------------------------------------------------------------------AAGTGACTTATGATAATCTCA 	8
---------------------------------------------------------------------------------------AGTGACTTATGATAATCTC 	1
---------------------------------------------------------------------------------------AGTGACTTATGATAATCTCATG 	1
---------------------------------------------------------------------------------------AGTGACTTATGATAATCTCAT 	15
------------------------------------------------------------------------------------------GACTTATGATAATCTCATGAA 	1

Overlaps with: MNEST040098 MNEST047021
Overlaps with miRBase pre-miRNAs: ath-MIR400
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM277608	TATGAGAGTATTATAAGTCAC	GACTTATGATAATCTCATGAA	up	1	0

Secondary structure

GGTAAATTCTTTAACTGTTCTGAGGATTGTTTATGAGAGTATTATAAGTCACTACATTTGGTAAGCAAAGTGTTGTTTCTCAAACGAAGTGACTTATGATAATCTCATGAATGGATTTTGCAACTCTTAAAGAGAGCAT
-------------------------------TATGAGAGTATTATAAGTCAC 	10
------------------------------------------------------------------------------------------GACTTATGATAATCTCATGAA 	1

Overlaps with: MNEST040098 MNEST047021
Overlaps with miRBase pre-miRNAs: ath-MIR400
HuntMi prediction: true miRNA