miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATGATGCAGATTCTTCATCT

selected species: Physcomitrella patens



25 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TATGATGCAGATTCTTCATCT ACGAAGATCTGCATCATAAC up 2 1


Secondary structure

GCTCTTTTGCCTTCGCTAAGATATGATGCAGATTCTTCATCTGCGGGATATTCTTGCGTGGTATAACAGACGAAGATCTGCATCATAACCAAGCGGGAGTAAACATT
---------------------TATGATGCAGATTCTTCATCTG 	2
---------------------TATGATGCAGATTCTTCATC 	4
---------------------TATGATGCAGATTCTTCATCT 	83
---------------------TATGATGCAGATTCTTCAT 	5
----------------------ATGATGCAGATTCTTCATCT 	1
---------------------------------------------------------------------ACGAAGATCTGCATCATAAC 	5
----------------------------------------------------------------------CGAAGATCTGCATCATAAC 	1


Overlaps with: MNEST039555 MNEST039556
Overlaps with miRBase pre-miRNAs: ppt-MIR902f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TATGATGCAGATTCTTCATCT ATGAAGGTCTGCATCGTAGC up 0 1


Secondary structure

GCCCACTGGGTTATGATGCAGATTCTTCATCTACTTCACTGGAGCTTCCACAAGTGGTGCACCAGATGAAGGTCTGCATCGTAGCCGAGAGGA
----------TTATGATGCAGATTCTTCATCT 	1
-----------TATGATGCAGATTCTTCATCTA 	1
-----------TATGATGCAGATTCTTCATC 	4
-----------TATGATGCAGATTCTTCATCT 	83
-----------TATGATGCAGATTCTTCAT 	5
------------ATGATGCAGATTCTTCATCT 	1
-----------------------------------------------------------------ATGAAGGTCTGCATCGTAGC 	1


Overlaps with: MNEST039551 MNEST039552
Overlaps with miRBase pre-miRNAs: ppt-MIR902d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGC up 1 1


Secondary structure

ACTTGTTTCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTT
----------------TAGCCTATGATGCAGATTCTT 	1
----------------TAGCCTATGATGCAGATTCTTC 	2
---------------------TATGATGCAGATTCTTCATCTG 	2
---------------------TATGATGCAGATTCTTCATC 	4
---------------------TATGATGCAGATTCTTCATCT 	83
---------------------TATGATGCAGATTCTTCAT 	5
----------------------ATGATGCAGATTCTTCATCT 	1
------------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
-------------------------------------------------------------------------GACGAAGGTCTGCATCATAGC 	2
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAGC 	56
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	1
---------------------------------------------------------------------------CGAAGGTCTGCATCATAGC 	19


Overlaps with: MNEST006971
Overlaps with miRBase pre-miRNAs: ppt-MIR902b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313212 TATGATGCAGATTCTTCATCT ACGAAGATCTGCATCATAAC up 2 1


Secondary structure

GCTCTTTTGCCTTCGCTAAGATATGATGCAGATTCTTCATCTGCGGGATATTCTTGCGTGGTATAACAGACGAAGATCTGCATCATAACCAAGCGGGAGTAAACATT
---------------------TATGATGCAGATTCTTCAT 	33
---------------------TATGATGCAGATTCTTCATCTG 	66
---------------------TATGATGCAGATTCTTCATCT 	413
---------------------TATGATGCAGATTCTTCATC 	66
----------------------ATGATGCAGATTCTTCATCT 	8
----------------------ATGATGCAGATTCTTCATC 	1
-----------------------TGATGCAGATTCTTCATCTG 	1
---------------------------------------------------------------------ACGAAGATCTGCATCATAAC 	2


Overlaps with: MNEST039555 MNEST039556
Overlaps with miRBase pre-miRNAs: ppt-MIR902f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313212 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGT up 1 1


Secondary structure

GCTCATTTCCTCCTTCTAGCGTATGATGCAGATTCTTCATCTGTTGAACTGAATTTTTCTTAGTGATGCAGACGAAGGTCTGCATCATAGTCAAGGGGGAGGAAATATA
---------------------TATGATGCAGATTCTTCAT 	33
---------------------TATGATGCAGATTCTTCATCTGTT 	1
---------------------TATGATGCAGATTCTTCATCTG 	66
---------------------TATGATGCAGATTCTTCATCT 	413
---------------------TATGATGCAGATTCTTCATC 	66
----------------------ATGATGCAGATTCTTCATCT 	8
----------------------ATGATGCAGATTCTTCATC 	1
-----------------------TGATGCAGATTCTTCATCTG 	1
---------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	3
---------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
----------------------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
-----------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	100
-----------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	2
-----------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	5
-----------------------------------------------------------------------ACGAAGGTCTGCATCATAGTCA 	1
------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	4


Overlaps with: MNEST039549 MNEST039550
Overlaps with miRBase pre-miRNAs: ppt-MIR902c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313212 TATGATGCAGATTCTTCATCT ATGAAGGTCTGCATCGTAGC up 0 1


Secondary structure

GCCCACTGGGTTATGATGCAGATTCTTCATCTACTTCACTGGAGCTTCCACAAGTGGTGCACCAGATGAAGGTCTGCATCGTAGCCGAGAGGA
-----------TATGATGCAGATTCTTCAT 	33
-----------TATGATGCAGATTCTTCATCTA 	9
-----------TATGATGCAGATTCTTCATCT 	413
-----------TATGATGCAGATTCTTCATC 	66
------------ATGATGCAGATTCTTCATCT 	8
------------ATGATGCAGATTCTTCATC 	1


Overlaps with: MNEST039551 MNEST039552
Overlaps with miRBase pre-miRNAs: ppt-MIR902d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313212 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGT up 1 1


Secondary structure

TTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGA
-TCCGCTAGTCTATGATGCAGA 	1
------TAGTCTATGATGCAGATTCTTC 	8
-------AGTCTATGATGCAGATTCTTCA 	1
----------CTATGATGCAGATTCTTCATCTG 	1
----------CTATGATGCAGATTCTTCAT 	1
----------CTATGATGCAGATTCTTCATCT 	1
-----------TATGATGCAGATTCTTCAT 	33
-----------TATGATGCAGATTCTTCATCTGTT 	1
-----------TATGATGCAGATTCTTCATCTG 	66
-----------TATGATGCAGATTCTTCATCT 	413
-----------TATGATGCAGATTCTTCATC 	66
------------ATGATGCAGATTCTTCATCT 	8
------------ATGATGCAGATTCTTCATC 	1
-------------TGATGCAGATTCTTCATCTG 	1
-------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	3
-------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
--------------------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
---------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	100
---------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	2
---------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	5
---------------------------------------------------------------------ACGAAGGTCTGCATCATAGTCA 	1
----------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	4


Overlaps with: MNEST006973 MNEST039557 MNEST039558
Overlaps with miRBase pre-miRNAs: ppt-MIR902g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313212 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGT up 1 1


Secondary structure

TTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCATAGTCAAGAGGA
-TCCGCTAGTCTATGATGCAGA 	1
------TAGTCTATGATGCAGATTCTTC 	8
-------AGTCTATGATGCAGATTCTTCA 	1
----------CTATGATGCAGATTCTTCATCTG 	1
----------CTATGATGCAGATTCTTCAT 	1
----------CTATGATGCAGATTCTTCATCT 	1
-----------TATGATGCAGATTCTTCAT 	33
-----------TATGATGCAGATTCTTCATCTGTT 	1
-----------TATGATGCAGATTCTTCATCTG 	66
-----------TATGATGCAGATTCTTCATCT 	413
-----------TATGATGCAGATTCTTCATC 	66
------------ATGATGCAGATTCTTCATCT 	8
------------ATGATGCAGATTCTTCATC 	1
-------------TGATGCAGATTCTTCATCTG 	1
-----------------------------------------------------------AGACGAAGGTCTGCATCATAG 	3
-----------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
------------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
-------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	100
-------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	2
-------------------------------------------------------------ACGAAGGTCTGCATCATAG 	5
-------------------------------------------------------------ACGAAGGTCTGCATCATAGTCA 	1
--------------------------------------------------------------CGAAGGTCTGCATCATAGT 	4


Overlaps with: MNEST039553 MNEST039554
Overlaps with miRBase pre-miRNAs: ppt-MIR902e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313212 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGC up 1 1


Secondary structure

ACTTGTTTCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTT
-----------TCCTCTAGCCTATGATGCAGA 	1
----------------TAGCCTATGATGCAGATTCTTC 	12
-----------------AGCCTATGATGCAGATTCTTCATCT 	1
-----------------AGCCTATGATGCAGATTCTTCA 	1
--------------------CTATGATGCAGATTCTTCATCTG 	1
--------------------CTATGATGCAGATTCTTCAT 	1
--------------------CTATGATGCAGATTCTTCATCT 	1
---------------------TATGATGCAGATTCTTCAT 	33
---------------------TATGATGCAGATTCTTCATCTGTT 	1
---------------------TATGATGCAGATTCTTCATCTG 	66
---------------------TATGATGCAGATTCTTCATCT 	413
---------------------TATGATGCAGATTCTTCATC 	66
----------------------ATGATGCAGATTCTTCATCT 	8
----------------------ATGATGCAGATTCTTCATC 	1
-----------------------TGATGCAGATTCTTCATCTG 	1
-------------------------------------------TTTGTTATCGTTCTCATGGTGTACAT 	1
------------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	3
------------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	1
-------------------------------------------------------------------------GACGAAGGTCTGCATCATAGC 	4
-------------------------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAGC 	98
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	5
---------------------------------------------------------------------------CGAAGGTCTGCATCATAGC 	4


Overlaps with: MNEST006971
Overlaps with miRBase pre-miRNAs: ppt-MIR902b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM115095 TATGATGCAGATTCTTCATCT ACGAAGATCTGCATCATAAC up 2 1


Secondary structure

GCTCTTTTGCCTTCGCTAAGATATGATGCAGATTCTTCATCTGCGGGATATTCTTGCGTGGTATAACAGACGAAGATCTGCATCATAACCAAGCGGGAGTAAACATT
--------------------ATATGATGCAGATTCTTCATCT 	1
---------------------TATGATGCAGATTCTTCATCTG 	10
---------------------TATGATGCAGATTCTTCATC 	49
---------------------TATGATGCAGATTCTTCATCT 	206
---------------------TATGATGCAGATTCTTCAT 	15
----------------------ATGATGCAGATTCTTCATCT 	2
---------------------------------------------------------------------ACGAAGATCTGCATCATAAC 	2


Overlaps with: MNEST039555 MNEST039556
Overlaps with miRBase pre-miRNAs: ppt-MIR902f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM115095 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGT up 1 1


Secondary structure

GCTCATTTCCTCCTTCTAGCGTATGATGCAGATTCTTCATCTGTTGAACTGAATTTTTCTTAGTGATGCAGACGAAGGTCTGCATCATAGTCAAGGGGGAGGAAATATA
---------------------TATGATGCAGATTCTTCATCTG 	10
---------------------TATGATGCAGATTCTTCATC 	49
---------------------TATGATGCAGATTCTTCATCTGT 	1
---------------------TATGATGCAGATTCTTCATCT 	206
---------------------TATGATGCAGATTCTTCAT 	15
----------------------ATGATGCAGATTCTTCATCTGT 	1
----------------------ATGATGCAGATTCTTCATCT 	2
---------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
-----------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	2
-----------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	188
-----------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	3
------------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	18
---------------------------------------------------------------------------AGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST039549 MNEST039550
Overlaps with miRBase pre-miRNAs: ppt-MIR902c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM115095 TATGATGCAGATTCTTCATCT ATGAAGGTCTGCATCGTAGC up 0 1


Secondary structure

GCCCACTGGGTTATGATGCAGATTCTTCATCTACTTCACTGGAGCTTCCACAAGTGGTGCACCAGATGAAGGTCTGCATCGTAGCCGAGAGGA
-----------TATGATGCAGATTCTTCATC 	49
-----------TATGATGCAGATTCTTCATCT 	206
-----------TATGATGCAGATTCTTCAT 	15
------------ATGATGCAGATTCTTCATCT 	2


Overlaps with: MNEST039551 MNEST039552
Overlaps with miRBase pre-miRNAs: ppt-MIR902d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM115095 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGT up 1 1


Secondary structure

TTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGA
------TAGTCTATGATGCAGATTCTTC 	2
-----------TATGATGCAGATTCTTCATCTG 	10
-----------TATGATGCAGATTCTTCATC 	49
-----------TATGATGCAGATTCTTCATCTGT 	1
-----------TATGATGCAGATTCTTCATCT 	206
-----------TATGATGCAGATTCTTCAT 	15
------------ATGATGCAGATTCTTCATCTGT 	1
------------ATGATGCAGATTCTTCATCT 	2
-------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
---------------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	2
---------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	188
---------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	3
----------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
----------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	18
-------------------------------------------------------------------------AGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST006973 MNEST039557 MNEST039558
Overlaps with miRBase pre-miRNAs: ppt-MIR902g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM115095 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGT up 1 1


Secondary structure

TTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCATAGTCAAGAGGA
------TAGTCTATGATGCAGATTCTTC 	2
-----------TATGATGCAGATTCTTCATCTG 	10
-----------TATGATGCAGATTCTTCATC 	49
-----------TATGATGCAGATTCTTCATCTGT 	1
-----------TATGATGCAGATTCTTCATCT 	206
-----------TATGATGCAGATTCTTCAT 	15
------------ATGATGCAGATTCTTCATCTGT 	1
------------ATGATGCAGATTCTTCATCT 	2
-----------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
-------------------------------------------------------------ACGAAGGTCTGCATCATAGTC 	2
-------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	188
-------------------------------------------------------------ACGAAGGTCTGCATCATAG 	3
--------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
--------------------------------------------------------------CGAAGGTCTGCATCATAGT 	18
-----------------------------------------------------------------AGGTCTGCATCATAGTCAAG 	1


Overlaps with: MNEST039553 MNEST039554
Overlaps with miRBase pre-miRNAs: ppt-MIR902e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM115095 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGC up 1 1


Secondary structure

ACTTGTTTCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTT
---------------CTAGCCTATGATGCAGATTCTT 	1
----------------TAGCCTATGATGCAGATTCTTC 	9
----------------TAGCCTATGATGCAGATTCT 	1
-----------------AGCCTATGATGCAGATTCTTCA 	1
---------------------TATGATGCAGATTCTTCATCTG 	10
---------------------TATGATGCAGATTCTTCATC 	49
---------------------TATGATGCAGATTCTTCATCTGT 	1
---------------------TATGATGCAGATTCTTCATCT 	206
---------------------TATGATGCAGATTCTTCAT 	15
----------------------ATGATGCAGATTCTTCATCTGT 	1
----------------------ATGATGCAGATTCTTCATCT 	2
------------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	1
-------------------------------------------------------------------------GACGAAGGTCTGCATCATAGC 	2
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	3
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAGC 	95
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	3
---------------------------------------------------------------------------CGAAGGTCTGCATCATAGC 	9


Overlaps with: MNEST006971
Overlaps with miRBase pre-miRNAs: ppt-MIR902b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313213 TATGATGCAGATTCTTCATCT ACGAAGATCTGCATCATAAC up 2 1


Secondary structure

GCTCTTTTGCCTTCGCTAAGATATGATGCAGATTCTTCATCTGCGGGATATTCTTGCGTGGTATAACAGACGAAGATCTGCATCATAACCAAGCGGGAGTAAACATT
--------------------ATATGATGCAGATTCTTCATCT 	1
---------------------TATGATGCAGATTCTTCAT 	38
---------------------TATGATGCAGATTCTTCATCTG 	66
---------------------TATGATGCAGATTCTTCATCT 	428
---------------------TATGATGCAGATTCTTCATC 	70
----------------------ATGATGCAGATTCTTCATCTG 	2
----------------------ATGATGCAGATTCTTCATCT 	9
----------------------ATGATGCAGATTCTTCATC 	6
-----------------------TGATGCAGATTCTTCATCT 	1
-----------------------TGATGCAGATTCTTCATCTG 	1
---------------------------------------------------------------------ACGAAGATCTGCATCATAAC 	1


Overlaps with: MNEST039555 MNEST039556
Overlaps with miRBase pre-miRNAs: ppt-MIR902f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313213 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGT up 1 1


Secondary structure

GCTCATTTCCTCCTTCTAGCGTATGATGCAGATTCTTCATCTGTTGAACTGAATTTTTCTTAGTGATGCAGACGAAGGTCTGCATCATAGTCAAGGGGGAGGAAATATA
---------------------TATGATGCAGATTCTTCAT 	38
---------------------TATGATGCAGATTCTTCATCTGTT 	1
---------------------TATGATGCAGATTCTTCATCTG 	66
---------------------TATGATGCAGATTCTTCATCT 	428
---------------------TATGATGCAGATTCTTCATC 	70
----------------------ATGATGCAGATTCTTCATCTG 	2
----------------------ATGATGCAGATTCTTCATCTGT 	1
----------------------ATGATGCAGATTCTTCATCT 	9
----------------------ATGATGCAGATTCTTCATC 	6
-----------------------TGATGCAGATTCTTCATCT 	1
-----------------------TGATGCAGATTCTTCATCTG 	1
--------------------------------------------------------------------CAGACGAAGGTCTGCATCATAGT 	1
---------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	5
---------------------------------------------------------------------AGACGAAGGTCTGCATCAT 	1
---------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	2
----------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
----------------------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
-----------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	101
-----------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	4
------------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
------------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	5


Overlaps with: MNEST039549 MNEST039550
Overlaps with miRBase pre-miRNAs: ppt-MIR902c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313213 TATGATGCAGATTCTTCATCT ATGAAGGTCTGCATCGTAGC up 0 1


Secondary structure

GCCCACTGGGTTATGATGCAGATTCTTCATCTACTTCACTGGAGCTTCCACAAGTGGTGCACCAGATGAAGGTCTGCATCGTAGCCGAGAGGA
----------TTATGATGCAGATTCTTCAT 	1
-----------TATGATGCAGATTCTTCAT 	38
-----------TATGATGCAGATTCTTCATCTA 	5
-----------TATGATGCAGATTCTTCATCT 	428
-----------TATGATGCAGATTCTTCATC 	70
------------ATGATGCAGATTCTTCATCTA 	1
------------ATGATGCAGATTCTTCATCT 	9
------------ATGATGCAGATTCTTCATC 	6
-------------TGATGCAGATTCTTCATCT 	1


Overlaps with: MNEST039551 MNEST039552
Overlaps with miRBase pre-miRNAs: ppt-MIR902d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Physcomitrella patens GSM313213 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGT up 1 1


Secondary structure

TTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGA
------TAGTCTATGATGCAGATTCTTC 	5
-------AGTCTATGATGCAGATTCTTCA 	1
----------CTATGATGCAGATTCTTCATC 	1
----------CTATGATGCAGATTCTTCATCTG 	2
-----------TATGATGCAGATTCTTCAT 	38
-----------TATGATGCAGATTCTTCATCTGTT 	1
-----------TATGATGCAGATTCTTCATCTG 	66
-----------TATGATGCAGATTCTTCATCT 	428
-----------TATGATGCAGATTCTTCATC 	70
------------ATGATGCAGATTCTTCATCTG 	2
------------ATGATGCAGATTCTTCATCTGT 	1
------------ATGATGCAGATTCTTCATCT 	9
------------ATGATGCAGATTCTTCATC 	6
-------------TGATGCAGATTCTTCATCT 	1
-------------TGATGCAGATTCTTCATCTG 	1
------------------------------------------------------------------CAGACGAAGGTCTGCATCATAGT 	1
-------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	5
-------------------------------------------------------------------AGACGAAGGTCTGCATCAT 	1
-------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	2
--------------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
--------------------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
---------------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	101
---------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	4
----------------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
----------------------------------------------------------------------CGAAGGTCTGCATCATAGT 	5


Overlaps with: MNEST006973 MNEST039557 MNEST039558
Overlaps with miRBase pre-miRNAs: ppt-MIR902g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Physcomitrella patens GSM313213 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGT up 1 1


Secondary structure

TTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCATAGTCAAGAGGA
------TAGTCTATGATGCAGATTCTTC 	5
-------AGTCTATGATGCAGATTCTTCA 	1
----------CTATGATGCAGATTCTTCATC 	1
----------CTATGATGCAGATTCTTCATCTG 	2
-----------TATGATGCAGATTCTTCAT 	38
-----------TATGATGCAGATTCTTCATCTGTT 	1
-----------TATGATGCAGATTCTTCATCTG 	66
-----------TATGATGCAGATTCTTCATCT 	428
-----------TATGATGCAGATTCTTCATC 	70
------------ATGATGCAGATTCTTCATCTG 	2
------------ATGATGCAGATTCTTCATCTGT 	1
------------ATGATGCAGATTCTTCATCT 	9
------------ATGATGCAGATTCTTCATC 	6
-------------TGATGCAGATTCTTCATCT 	1
-------------TGATGCAGATTCTTCATCTG 	1
----------------------------------------------------------CAGACGAAGGTCTGCATCATAGT 	1
-----------------------------------------------------------AGACGAAGGTCTGCATCATA 	5
-----------------------------------------------------------AGACGAAGGTCTGCATCAT 	1
-----------------------------------------------------------AGACGAAGGTCTGCATCATAG 	2
------------------------------------------------------------GACGAAGGTCTGCATCATAGT 	1
------------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
-------------------------------------------------------------ACGAAGGTCTGCATCATAGT 	101
-------------------------------------------------------------ACGAAGGTCTGCATCATAG 	4
--------------------------------------------------------------CGAAGGTCTGCATCATAGTC 	1
--------------------------------------------------------------CGAAGGTCTGCATCATAGT 	5


Overlaps with: MNEST039553 MNEST039554
Overlaps with miRBase pre-miRNAs: ppt-MIR902e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Physcomitrella patens GSM313213 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGC up 1 1


Secondary structure

ACTTGTTTCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTT
-----------TCCTCTAGCCTATGATGCAGA 	2
----------------TAGCCTATGATGCAGATTCTTC 	10
-----------------AGCCTATGATGCAGATTCTTCA 	1
--------------------CTATGATGCAGATTCTTCATC 	1
--------------------CTATGATGCAGATTCTTCATCTG 	2
---------------------TATGATGCAGATTCTTCAT 	38
---------------------TATGATGCAGATTCTTCATCTGTT 	1
---------------------TATGATGCAGATTCTTCATCTG 	66
---------------------TATGATGCAGATTCTTCATCT 	428
---------------------TATGATGCAGATTCTTCATC 	70
----------------------ATGATGCAGATTCTTCATCTG 	2
----------------------ATGATGCAGATTCTTCATCTGT 	1
----------------------ATGATGCAGATTCTTCATCT 	9
----------------------ATGATGCAGATTCTTCATC 	6
-----------------------TGATGCAGATTCTTCATCT 	1
-----------------------TGATGCAGATTCTTCATCTG 	1
------------------------------------------------------------------------AGACGAAGGTCTGCATCATA 	5
------------------------------------------------------------------------AGACGAAGGTCTGCATCAT 	1
------------------------------------------------------------------------AGACGAAGGTCTGCATCATAGC 	1
------------------------------------------------------------------------AGACGAAGGTCTGCATCATAG 	2
-------------------------------------------------------------------------GACGAAGGTCTGCATCATAGC 	2
-------------------------------------------------------------------------GACGAAGGTCTGCATCATAG 	1
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAGC 	116
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	5
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	4
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCCAAG 	1
---------------------------------------------------------------------------CGAAGGTCTGCATCATAGCCA 	1
---------------------------------------------------------------------------CGAAGGTCTGCATCATAGC 	3
------------------------------------------------------------------------------AGGTCTGCATCATAGCCAAGA 	1


Overlaps with: MNEST006971
Overlaps with miRBase pre-miRNAs: ppt-MIR902b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Physcomitrella patens GSM313215 TATGATGCAGATTCTTCATCT ATGAAGGTCTGCATCGTAGC up 0 1


Secondary structure

GCCCACTGGGTTATGATGCAGATTCTTCATCTACTTCACTGGAGCTTCCACAAGTGGTGCACCAGATGAAGGTCTGCATCGTAGCCGAGAGGA
-----------TATGATGCAGATTCTTCATCT 	92
-----------TATGATGCAGATTCTTCAT 	13
-----------TATGATGCAGATTCTTCATCTA 	1
-----------TATGATGCAGATTCTTCATC 	68
------------ATGATGCAGATTCTTCATCT 	1
------------ATGATGCAGATTCTTCATC 	3
-----------------------------------------------------------------ATGAAGGTCTGCATCGTAGC 	2


Overlaps with: MNEST039551 MNEST039552
Overlaps with miRBase pre-miRNAs: ppt-MIR902d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Physcomitrella patens GSM115096 TATGATGCAGATTCTTCATCT ACGAAGATCTGCATCATAAC up 2 1


Secondary structure

GCTCTTTTGCCTTCGCTAAGATATGATGCAGATTCTTCATCTGCGGGATATTCTTGCGTGGTATAACAGACGAAGATCTGCATCATAACCAAGCGGGAGTAAACATT
---------------------TATGATGCAGATTCTTCATCTG 	43
---------------------TATGATGCAGATTCTTCATCT 	356
---------------------TATGATGCAGATTCTTCATC 	98
---------------------TATGATGCAGATTCTTCAT 	88
----------------------ATGATGCAGATTCTTCATCT 	4
----------------------ATGATGCAGATTCTTCATC 	1
---------------------------------------------------------------------ACGAAGATCTGCATCATAAC 	9
----------------------------------------------------------------------CGAAGATCTGCATCATAAC 	1


Overlaps with: MNEST039555 MNEST039556
Overlaps with miRBase pre-miRNAs: ppt-MIR902f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Physcomitrella patens GSM115096 TATGATGCAGATTCTTCATCT ATGAAGGTCTGCATCGTAGC up 0 1


Secondary structure

GCCCACTGGGTTATGATGCAGATTCTTCATCTACTTCACTGGAGCTTCCACAAGTGGTGCACCAGATGAAGGTCTGCATCGTAGCCGAGAGGA
----------TTATGATGCAGATTCTTCATC 	2
-----------TATGATGCAGATTCTTCATCT 	356
-----------TATGATGCAGATTCTTCATC 	98
-----------TATGATGCAGATTCTTCAT 	88
------------ATGATGCAGATTCTTCATCT 	4
------------ATGATGCAGATTCTTCATC 	1


Overlaps with: MNEST039551 MNEST039552
Overlaps with miRBase pre-miRNAs: ppt-MIR902d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Physcomitrella patens GSM115096 TATGATGCAGATTCTTCATCT ACGAAGGTCTGCATCATAGC up 1 1


Secondary structure

ACTTGTTTCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTT
----------------TAGCCTATGATGCAGATTCTTCA 	1
----------------TAGCCTATGATGCAGATTCTTC 	11
--------------------CTATGATGCAGATTCTTCATCT 	1
---------------------TATGATGCAGATTCTTCATCTG 	43
---------------------TATGATGCAGATTCTTCATCT 	356
---------------------TATGATGCAGATTCTTCATC 	98
---------------------TATGATGCAGATTCTTCAT 	88
----------------------ATGATGCAGATTCTTCATCT 	4
----------------------ATGATGCAGATTCTTCATC 	1
-------------------------------------------------------------------------GACGAAGGTCTGCATCATAGC 	5
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAGCC 	3
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAGC 	222
--------------------------------------------------------------------------ACGAAGGTCTGCATCATAG 	7
---------------------------------------------------------------------------CGAAGGTCTGCATCATAGCC 	3
---------------------------------------------------------------------------CGAAGGTCTGCATCATAGC 	21


Overlaps with: MNEST006971
Overlaps with miRBase pre-miRNAs: ppt-MIR902b
HuntMi prediction: true miRNA