miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATGGAAGAAATTGTAGTATT

selected species: Arabidopsis thaliana



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM366870 TATGGAAGAAATTGTAGTATT TACTACTTTTTCATCCATTAA down 4 0


Secondary structure

TCAACACATTCTTAATATATAATACTACTTTTTCATCCATTAAACCCCTTACAATGTCGAGTAAACGAAGCATCTGTCCCCTGGTATTGTCTTCGAGCTTGGTGTTTTTTTCTAGCCAACTCCAAGTTCTCGAGTTGATCATTGTTTGTATTCTTGAGACATTATTTGGGGACGAGATGTTTTGTTGACTCGATATAAGAAGGGGCTTTATGGAAGAAATTGTAGTATTATATATCGAGAGTGGCTCT
----------------------TACTACTTTTTCATCCATTAA 	1
-------------------------------------------ACCCCTTACAATGTCGAGTAA 	1
----------------------------------------------------------------ACGAAGCATCTGTCCCCTGGT 	11
-----------------------------------------------------------------CGAAGCATCTGTCCCCTGGT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGGGACGAGATGTTTTGTT 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGGACGAGATGTTTTGTTG 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGGACGAGATGTTTTGTT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGGACGAGATGTTTTGTTG 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTCGATATAAGAAGGGGCT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGATATAAGAAGGGGCTT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGGAAGAAATTGTAGTAT 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGGAAGAAATTGTAGTATT 	33


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM366870 TATGGAAGAAATTGTAGTATT TACTACTTTTTCATCCATTAA down 4 0


Secondary structure

TCAACACATTCTTAATATACAATACTACTTTTTCATCCATTAATCCCCTTACAATGTCGAGTAAACGAAGCATCTGTCCCCTGGTATTGTCTTCGAGCTTGGTGTGTTTTTCTAGCCAGCCCCAAGTTCTCGAGTTGATCATTGTTTGTATTCTGACACATTATTTGGGGACGAGATGTTTTGTTGACTCGATATAAGAAGGGGCTTTATGGAAGAAATTGTAGTATTATATATTGAGAATGGCTCT
----------------------TACTACTTTTTCATCCATTAA 	1
----------------------------------------------------------------ACGAAGCATCTGTCCCCTGGT 	11
-----------------------------------------------------------------CGAAGCATCTGTCCCCTGGT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGGGACGAGATGTTTTGTT 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGGACGAGATGTTTTGTTG 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGGACGAGATGTTTTGTT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGGACGAGATGTTTTGTTG 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTCGATATAAGAAGGGGCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGATATAAGAAGGGGCTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGGAAGAAATTGTAGTAT 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGGAAGAAATTGTAGTATT 	33

Overlaps with: MNEST040120 MNEST047042
Overlaps with miRBase pre-miRNAs: ath-MIR447b
HuntMi prediction: true miRNA