miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATGTCCATTACAGTTGCATAC

selected species: Physcomitrella patens



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313212 TATGTCCATTACAGTTGCATAC ATGCAACTTGTATGGACAGAGT down 5 0


Secondary structure

TGCACTCATGTATGCAACTTGTATGGACAGAGTGACTAGTCTAGTGTTCACGAGTGCCAATTTTTGGATGCCTTCTATTGCTGTGCTGGTCTGTGAGGCGGCGTAACTCCTTGTTTTGCAACAGTTGACAGTGCACAAAGTATATGTGTGGCTGGTGACGTGCGACGCATTGGGTAAGATCTATGTCTCTTCAGTGCGCGGGGAAGTTTGTCCGCCGACGGCATTCAGATTGCTAAACTAGACTCGTCAGTATGTCCATTACAGTTGCATACTTGTGTGGA
-----------ATGCAACTTGTATGGACAGA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTCCATTACAGTTGCAT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTCCATTACAGTTGCATAC 	9
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTCCATTACAGTTGCATA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCCATTACAGTTGCATAC 	1

Overlaps with: MNEST039517 MNEST051419
Overlaps with miRBase pre-miRNAs: ppt-MIR534b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313213 TATGTCCATTACAGTTGCATAC ATGCAACTTGTATGGACAGAGT down 5 0


Secondary structure

TGCACTCATGTATGCAACTTGTATGGACAGAGTGACTAGTCTAGTGTTCACGAGTGCCAATTTTTGGATGCCTTCTATTGCTGTGCTGGTCTGTGAGGCGGCGTAACTCCTTGTTTTGCAACAGTTGACAGTGCACAAAGTATATGTGTGGCTGGTGACGTGCGACGCATTGGGTAAGATCTATGTCTCTTCAGTGCGCGGGGAAGTTTGTCCGCCGACGGCATTCAGATTGCTAAACTAGACTCGTCAGTATGTCCATTACAGTTGCATACTTGTGTGGA
-----------ATGCAACTTGTATGGACAGA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTCCATTACAGTTGCATAC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTCCATTACAGTTGCATA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCCATTACAGTTGCATAC 	4

Overlaps with: MNEST039517 MNEST051419
Overlaps with miRBase pre-miRNAs: ppt-MIR534b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115096 TATGTCCATTACAGTTGCATAC ATGCAACTTGTATGGACAGAGT down 5 0


Secondary structure

TGCACTCATGTATGCAACTTGTATGGACAGAGTGACTAGTCTAGTGTTCACGAGTGCCAATTTTTGGATGCCTTCTATTGCTGTGCTGGTCTGTGAGGCGGCGTAACTCCTTGTTTTGCAACAGTTGACAGTGCACAAAGTATATGTGTGGCTGGTGACGTGCGACGCATTGGGTAAGATCTATGTCTCTTCAGTGCGCGGGGAAGTTTGTCCGCCGACGGCATTCAGATTGCTAAACTAGACTCGTCAGTATGTCCATTACAGTTGCATACTTGTGTGGA
-----------ATGCAACTTGTATGGACAGAGT 	3
------------TGCAACTTGTATGGACAGAGT 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTCCATTACAGTTGCATA 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTCCATTACAGTTGCATAC 	19
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCCATTACAGTTGCATAC 	1

Overlaps with: MNEST039517 MNEST051419
Overlaps with miRBase pre-miRNAs: ppt-MIR534b
HuntMi prediction: true miRNA