miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATGTGCCCTTGGACTACATCG

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540642 TATGTGCCCTTGGACTACATCG ATGCAGTCCATGGGCATATACA up 3 0


Secondary structure

CCGAATGCCCGTGTGATCCCTGGTGTGAGGGTATGTGCCCTTGGACTACATCGTGGAAGCCAGCACCATGCAGTCCATGGGCATATACACTTGCCTCAAGGCCTAGATCTTCACCGA
-------------------------------TATGTGCCCTTGGACTACATCG 	7
------------------------------------------------------------------CATGCAGTCCATGGGCATAT 	1
-------------------------------------------------------------------ATGCAGTCCATGGGCATATACA 	2
---------------------------------------------------------------------GCAGTCCATGGGCATATACACT 	1
---------------------------------------------------------------------GCAGTCCATGGGCATATACAC 	1

Overlaps with: MNEST026534
Overlaps with miRBase pre-miRNAs: dre-mir-455a tgu-mir-455
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 TATGTGCCCTTGGACTACATCG ATGCAGTCCATGGGCATATACA up 3 0


Secondary structure

CCGAATGCCCGTGTGATCCCTGGTGTGAGGGTATGTGCCCTTGGACTACATCGTGGAAGCCAGCACCATGCAGTCCATGGGCATATACACTTGCCTCAAGGCCTAGATCTTCACCGA
------------------------------GTATGTGCCCTTGGACTACATCG 	1
-------------------------------TATGTGCCCTTGGACTACATCG 	31
-------------------------------TATGTGCCCTTGGACTACATC 	2
---------------------------------TGTGCCCTTGGACTACATCGTG 	3
------------------------------------------------------------------CATGCAGTCCATGGGCATATACAC 	1
-------------------------------------------------------------------ATGCAGTCCATGGGCATATACAC 	11
-------------------------------------------------------------------ATGCAGTCCATGGGCATATACA 	6
--------------------------------------------------------------------TGCAGTCCATGGGCATATACA 	3
--------------------------------------------------------------------TGCAGTCCATGGGCATATACAC 	24
---------------------------------------------------------------------GCAGTCCATGGGCATATACA 	1
---------------------------------------------------------------------GCAGTCCATGGGCATATACAC 	4

Overlaps with: MNEST026534
Overlaps with miRBase pre-miRNAs: dre-mir-455a tgu-mir-455
HuntMi prediction: true miRNA