miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATTGCACACTAATGTACCCT

selected species: Ciona intestinalis



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TATTGCACACTAATGTACCCT GGTATGTTTAGTGTTCAAGAGC down 3 1


Secondary structure

TCTAAACACGAATGACAGTCATGGTATGTTTAGTGTTCAAGAGCAAGCATAGCTATTGCACACTAATGTACCCTGGCTGTTTTATCACTCTCA
----------------------GGTATGTTTAGTGTTCAAGAGC 	2
----------------------GGTATGTTTAGTGTTCAAGAG 	6
----------------------GGTATGTTTAGTGTTCAAG 	9
-----------------------------------------------------TATTGCACACTAATGTACCCT 	24
-----------------------------------------------------TATTGCACACTAATGTACC 	1

Overlaps with: MNEST024966 MNEST024967
Overlaps with miRBase pre-miRNAs: cin-mir-4009b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 TATTGCACACTAATGTACCCT GGTATGTTTAGTGTTCAAGAGC down 3 1


Secondary structure

TCTAAACACGAATGACAGTCATGGTATGTTTAGTGTTCAAGAGCAAGCATAGCTATTGCACACTAATGTACCCTGGCTGTTTTATCACTCTCA
----------------------GGTATGTTTAGTGTTCAAG 	4
-----------------------------------------------------TATTGCACACTAATGTACCCT 	25
-----------------------------------------------------TATTGCACACTAATGTACCC 	1
-----------------------------------------------------TATTGCACACTAATGTACC 	2

Overlaps with: MNEST024966 MNEST024967
Overlaps with miRBase pre-miRNAs: cin-mir-4009b
HuntMi prediction: true miRNA