miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TATTGCACACTTCCCGGCCTTT

selected species: Drosophila melanogaster

15 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
-----------------------------------------------------------ATATTGCACACTTCCCGGCCTT 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	39
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	95
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	13
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAAA 	6
------------------------------------------------------------TATTGCACACTTCCCGGCC 	3
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	220
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	57
--------------------------------------------------------------TTGCACACTTCCCGGCCTTT 	1

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399106-16287	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
----------------------AGGGCGGGTCGTGTGTCAGTGTA 	25
----------------------AGGGCGGGTCGTGTGTCAGT 	1
----------------------AGGGCGGGTCGTGTGTCAGTGT 	6
-----------------------------------------------------------ATATTGCACACTTCCCGGCCTTT 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	1795
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	62
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	73
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	68
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	12
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAAA 	25
------------------------------------------------------------TATTGCACACTTCCCGGCC 	4
-------------------------------------------------------------ATTGCACACTTCCCGGCCTTT 	4
-------------------------------------------------------------ATTGCACACTTCCCGGCCTTTAA 	1
-------------------------------------------------------------ATTGCACACTTCCCGGCCTTTA 	1
--------------------------------------------------------------TTGCACACTTCCCGGCCTTT 	9
--------------------------------------------------------------TTGCACACTTCCCGGCCTTTA 	1

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM466487_wt_total	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
----------------------AGGGCGGGTCGTGTGTCAGTGTATT 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	20
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	3
-------------------------------------------------------------ATTGCACACTTCCCGGCCTTTAA 	1
-------------------------------------------------------------ATTGCACACTTCCCGGCCTTT 	1

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM399105-16286	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
----------------------AGGGCGGGTCGTGTGTCAGTGTA 	5
----------------------AGGGCGGGTCGTGTGTCAG 	1
----------------------AGGGCGGGTCGTGTGTCAGTGT 	4
-----------------------------------------------------------ATATTGCACACTTCCCGGCCTTT 	1
-----------------------------------------------------------ATATTGCACACTTCCCGGCCTTTA 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	238
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	146
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	25
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAAA 	10
------------------------------------------------------------TATTGCACACTTCCCGGCC 	2
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	1078
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	83
-------------------------------------------------------------ATTGCACACTTCCCGGCCTTT 	3
--------------------------------------------------------------TTGCACACTTCCCGGCCTTTAA 	2
--------------------------------------------------------------TTGCACACTTCCCGGCCTTT 	4

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM360262-14327	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
----------------------AGGGCGGGTCGTGTGTCAGTGTA 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	9
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	37
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	7
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAAA 	2
------------------------------------------------------------TATTGCACACTTCCCGGCC 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	83
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	16
-------------------------------------------------------------ATTGCACACTTCCCGGCCTTT 	2

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360256-14324	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	6
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	4

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM466496_r2d2_homozygotes_untreated	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	5
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	2

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM286605-9793	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
----------------------AGGGCGGGTCGTGTGTCAGTGTA 	4
----------------------AGGGCGGGTCGTGTGTCAGTG 	1
----------------------AGGGCGGGTCGTGTGTCAGTGT 	1
-----------------------GGGCGGGTCGTGTGTCAGTGTATT 	2
-----------------------------------------------------------ATATTGCACACTTCCCGGCCTTT 	5
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	4293
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	454
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	268
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	442
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	24
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAAA 	75
------------------------------------------------------------TATTGCACACTTCCCGGCC 	4
-------------------------------------------------------------ATTGCACACTTCCCGGCCTTT 	10
--------------------------------------------------------------TTGCACACTTCCCGGCCTTTAAA 	5
--------------------------------------------------------------TTGCACACTTCCCGGCCTTTAA 	1
--------------------------------------------------------------TTGCACACTTCCCGGCCTTT 	13

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM360260-14326	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
----------------------AGGGCGGGTCGTGTGTCAGTGTA 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	8
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	19
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	4
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAAA 	3
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	57
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	5

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM322543-14323	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	19
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	14
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	9
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	373
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	16

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM286607-9796	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
----------------------AGGGCGGGTCGTGTGTCAGTGTA 	1
-----------------------------------------------------------ATATTGCACACTTCCCGGCCTTT 	2
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	142
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	170
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	29
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAAA 	11
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	1357
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	172
--------------------------------------------------------------TTGCACACTTCCCGGCCTT 	1
--------------------------------------------------------------TTGCACACTTCCCGGCCTTTA 	1
--------------------------------------------------------------TTGCACACTTCCCGGCCTTT 	1

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM286604-9792	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
----------------------AGGGCGGGTCGTGTGTCAGTGTATT 	2
----------------------AGGGCGGGTCGTGTGTCAGTG 	3
-----------------------------------------------------------ATATTGCACACTTCCCGGCCTTT 	3
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	395
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	496
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	61
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAAA 	71
------------------------------------------------------------TATTGCACACTTCCCGGCC 	2
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	4458
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	286
-------------------------------------------------------------ATTGCACACTTCCCGGCCTTT 	5
--------------------------------------------------------------TTGCACACTTCCCGGCCTTTA 	2
--------------------------------------------------------------TTGCACACTTCCCGGCCTTT 	9
---------------------------------------------------------------TGCACACTTCCCGGCCTTT 	4

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Drosophila melanogaster	GSM385744-16261	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	6

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Drosophila melanogaster	GSM385748-16264	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	14

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Drosophila melanogaster	GSM399110-16285	TATTGCACACTTCCCGGCCTTT	AGGGCGGGTCGTGTGTCAGTGTA	down	4	1

Secondary structure

TTGCGAAAACATAAACATTTGCAGGGCGGGTCGTGTGTCAGTGTATTTATATCTTAGCTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTTTCAAC
-----------------------------------------------------------ATATTGCACACTTCCCGGCCTTT 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTT 	62
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTA 	103
------------------------------------------------------------TATTGCACACTTCCCGGCCT 	8
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAAA 	20
------------------------------------------------------------TATTGCACACTTCCCGGCC 	1
------------------------------------------------------------TATTGCACACTTCCCGGCCTTT 	862
------------------------------------------------------------TATTGCACACTTCCCGGCCTTTAA 	57
--------------------------------------------------------------TTGCACACTTCCCGGCCTTTAA 	3
--------------------------------------------------------------TTGCACACTTCCCGGCCTTT 	5

Overlaps with: MNEST036457 MNEST036458
Overlaps with miRBase pre-miRNAs: dme-mir-310
HuntMi prediction: true miRNA