miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TATTGCACATTCACCGGCCTGA

selected species: Drosophila melanogaster



13 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399106-16287 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
---------------------CGGACGGTATATGGGTTAATAT 	2
---------------------CGGACGGTATATGGGTTAATATT 	19
---------------------------------------------------------ATATTGCACATTCACCGGCCTG 	1
---------------------------------------------------------ATATTGCACATTCACCGGCCTGA 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAAA 	7
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	91
----------------------------------------------------------TATTGCACATTCACCGGCCT 	5
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAA 	64
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	77
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	1334
-----------------------------------------------------------ATTGCACATTCACCGGCCTGAAA 	3
-----------------------------------------------------------ATTGCACATTCACCGGCCTGA 	6
-----------------------------------------------------------ATTGCACATTCACCGGCCTGAA 	2
------------------------------------------------------------TTGCACATTCACCGGCCTG 	1
------------------------------------------------------------TTGCACATTCACCGGCCTGA 	11


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM466487_wt_total TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
---------------------CGGACGGTATATGGGTTAA 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	3
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	18


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399105-16286 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
---------------------CGGACGGTATATGGGTTAAT 	4
---------------------CGGACGGTATATGGGTTAATATT 	8
---------------------CGGACGGTATATGGGTTAATA 	3
---------------------CGGACGGTATATGGGTTAATAT 	9
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	148
----------------------------------------------------------TATTGCACATTCACCGGCCT 	14
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAA 	31
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAAA 	4
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	98
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	366
-----------------------------------------------------------ATTGCACATTCACCGGCCTGAAA 	1
-----------------------------------------------------------ATTGCACATTCACCGGCCTGA 	2
-----------------------------------------------------------ATTGCACATTCACCGGCCTG 	3
-----------------------------------------------------------ATTGCACATTCACCGGCCTGAA 	2
------------------------------------------------------------TTGCACATTCACCGGCCTG 	1
------------------------------------------------------------TTGCACATTCACCGGCCTGAA 	1
------------------------------------------------------------TTGCACATTCACCGGCCTGAAA 	1
------------------------------------------------------------TTGCACATTCACCGGCCTGA 	3


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM360256-14324 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	5


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
----------------------------------------------------------TATTGCACATTCACCGGCC 	2
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	5
-----------------------------------------------------------ATTGCACATTCACCGGCCTGAA 	1


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM286605-9793 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
--------------------TCGGACGGTATATGGGTTAATAT 	1
---------------------CGGACGGTATATGGGTTAATAT 	10
---------------------CGGACGGTATATGGGTTAATATT 	57
---------------------------------------------------------ATATTGCACATTCACCGGCCTG 	4
---------------------------------------------------------ATATTGCACATTCACCGGCCTGA 	1
---------------------------------------------------------ATATTGCACATTCACCGGCCTGAA 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAAA 	20
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	198
----------------------------------------------------------TATTGCACATTCACCGGCCT 	14
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAA 	210
----------------------------------------------------------TATTGCACATTCACCGGCC 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	355
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	2047
-----------------------------------------------------------ATTGCACATTCACCGGCCTGAAA 	15
-----------------------------------------------------------ATTGCACATTCACCGGCCTGA 	27
-----------------------------------------------------------ATTGCACATTCACCGGCCTGAA 	11
------------------------------------------------------------TTGCACATTCACCGGCCTGA 	5
------------------------------------------------------------TTGCACATTCACCGGCCTGAAA 	2


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM360260-14326 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	13
----------------------------------------------------------TATTGCACATTCACCGGCCT 	3
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	8
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	46


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM322543-14323 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
---------------------CGGACGGTATATGGGTTAAT 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	22
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAA 	2
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	16
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	89
-----------------------------------------------------------ATTGCACATTCACCGGCCTGA 	1


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM286607-9796 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
--------------------TCGGACGGTATATGGGTTAATAT 	8
---------------------CGGACGGTATATGGGTTAATATT 	27
---------------------CGGACGGTATATGGGTTAATAT 	7
---------------------------------------------------------ATATTGCACATTCACCGGCCTGA 	5
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	69
----------------------------------------------------------TATTGCACATTCACCGGCCT 	19
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAA 	53
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	148
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	972
-----------------------------------------------------------ATTGCACATTCACCGGCCTGA 	4
-----------------------------------------------------------ATTGCACATTCACCGGCCTGAA 	3
------------------------------------------------------------TTGCACATTCACCGGCCTGA 	5


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM286604-9792 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
---------------------CGGACGGTATATGGGTTAATATT 	12
---------------------CGGACGGTATATGGGTTAATA 	7
---------------------CGGACGGTATATGGGTTAATAT 	15
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	263
----------------------------------------------------------TATTGCACATTCACCGGCCT 	29
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAA 	73
----------------------------------------------------------TATTGCACATTCACCGGCC 	3
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAAA 	10
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	175
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	1300
-----------------------------------------------------------ATTGCACATTCACCGGCCTGA 	9
-----------------------------------------------------------ATTGCACATTCACCGGCCTG 	4
-----------------------------------------------------------ATTGCACATTCACCGGCCTGAA 	2
------------------------------------------------------------TTGCACATTCACCGGCCTGA 	8


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM322208-14317 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
---------------------CGGACGGTATATGGGTTAATAT 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	1
----------------------------------------------------------TATTGCACATTCACCGGCCT 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	2
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	11


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM385748-16264 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	5


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM399110-16285 TATTGCACATTCACCGGCCTGA GGACGGTATATGGGTTAATATT down 5 2


Secondary structure

CGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACAT
---------------------CGGACGGTATATGGGTTAATATT 	9
----------------------------------------------------------TATTGCACATTCACCGGCCTG 	30
----------------------------------------------------------TATTGCACATTCACCGGCCT 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAA 	9
----------------------------------------------------------TATTGCACATTCACCGGCCTGAAAA 	1
----------------------------------------------------------TATTGCACATTCACCGGCCTGAA 	39
----------------------------------------------------------TATTGCACATTCACCGGCCTGA 	345
-----------------------------------------------------------ATTGCACATTCACCGGCCTGA 	8


Overlaps with: MNEST036459 MNEST036460
Overlaps with miRBase pre-miRNAs: dme-mir-311
HuntMi prediction: true miRNA