miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TATTGCACATTGGAATGGTA

selected species: Ciona intestinalis



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343282-14442 TATTGCACATTGGAATGGTACT TGCTATTCATGTGCAAGAGT down 1 2


Secondary structure

GTTGGTGTTCAGTGCTATTCATGTGCAAGAGTTAATACAGCCGTGCTATTGCACATTGGAATGGTACTTACCACCAT
----------AGTGCTATTCATGTGCAAGAGT 	4
----------AGTGCTATTCATGTGCAAGAG 	8
----------AGTGCTATTCATGTGCAAG 	6
----------------------------------------------TATTGCACATTGGAATGGTACT 	1984
----------------------------------------------TATTGCACATTGGAATGGTAC 	678
----------------------------------------------TATTGCACATTGGAATGGTA 	257
----------------------------------------------TATTGCACATTGGAATGGT 	1053
-----------------------------------------------ATTGCACATTGGAATGGTACTT 	7
-----------------------------------------------ATTGCACATTGGAATGGTA 	1
------------------------------------------------TTGCACATTGGAATGGTACTT 	2
-------------------------------------------------TGCACATTGGAATGGTACTTA 	1

Overlaps with: MNEST024853 MNEST024854
Overlaps with miRBase pre-miRNAs: cin-mir-367
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343286 TATTGCACATTGGAATGGTA CTATTCATGTGCAAGAGT down 1 2


Secondary structure

TGGTGTTCAGTGCTATTCATGTGCAAGAGTTAATACAGCCGTGCTATTGCACATTGGAATGGTACTTACCACC
--------AGTGCTATTCATGTGCAAGA 	6
--------------------------------------------TATTGCACATTGGAATGGTA 	222
---------------------------------------------ATTGCACATTGGAATGGTAC 	3

Overlaps with: MNEST024853 MNEST024854
Overlaps with miRBase pre-miRNAs: cin-mir-367
HuntMi prediction: true miRNA