miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TATTGCACCAGTCCCGGCCTAT

selected species: Bombyx mori

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Bombyx mori	GSM449725_whole_body_clean	TATTGCACCAGTCCCGGCCTAT	GGGCAGTGACTGGCGCCATATT	down	6	0

Secondary structure

GGCGCGGCACAGGAGCGGCTCGTCATCCTTTGTCCGGGAGGCCCGTTTGGCTGGGCAGTGACTGGCGCCATATTCGGTACGTGTGCGATATTGCACCAGTCCCGGCCTATCCGAGCGGGCCCGTCCGTCGAGAGTCGAGACCGCTACTCAGGCGCTCAG
----------------------------------------------------------------------------------------TATTGCACCAGTCCCGGCCTAT 	16

Overlaps with: MNEST035535
Overlaps with miRBase pre-miRNAs: bmo-mir-92a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Bombyx mori	GSM449726_Anterior_silkgland_clean	TATTGCACCAGTCCCGGCCTAT	GGGCAGTGACTGGCGCCATATT	down	6	0

Secondary structure

GGCGCGGCACAGGAGCGGCTCGTCATCCTTTGTCCGGGAGGCCCGTTTGGCTGGGCAGTGACTGGCGCCATATTCGGTACGTGTGCGATATTGCACCAGTCCCGGCCTATCCGAGCGGGCCCGTCCGTCGAGAGTCGAGACCGCTACTCAGGCGCTCAG
----------------------------------------------------------------------------------------TATTGCACCAGTCCCGGCCTAT 	32

Overlaps with: MNEST035535
Overlaps with miRBase pre-miRNAs: bmo-mir-92a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Bombyx mori	GSM449727_Posterior_silkgland_clean	TATTGCACCAGTCCCGGCCTAT	GGGCAGTGACTGGCGCCATATT	down	6	0

Secondary structure

GGCGCGGCACAGGAGCGGCTCGTCATCCTTTGTCCGGGAGGCCCGTTTGGCTGGGCAGTGACTGGCGCCATATTCGGTACGTGTGCGATATTGCACCAGTCCCGGCCTATCCGAGCGGGCCCGTCCGTCGAGAGTCGAGACCGCTACTCAGGCGCTCAG
----------------------------------------------------------------------------------------TATTGCACCAGTCCCGGCCTAT 	23
----------------------------------------------------------------------------------------TATTGCACCAGTCCCGGCCTA 	3

Overlaps with: MNEST035535
Overlaps with miRBase pre-miRNAs: bmo-mir-92a
HuntMi prediction: true miRNA