miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATTGCACCTGTCCCGGCCG

selected species: Ciona intestinalis



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343284-14444 TATTGCACCTGTCCCGGCCG GTCGTGTTTGGTGTATCATACT down 6 2


Secondary structure

TCATCTGTGGTGCCTTCGATAGGTCGTGTTTGGTGTATCATACTTAAGCAAACACAGTATTGCACCTGTCCCGGCCGATCGCGGTTACTTTTGTCA
---------------------GGTCGTGTTTGGTGTATCATACT 	48
---------------------GGTCGTGTTTGGTGTATCATAC 	26
---------------------GGTCGTGTTTGGTGTATCATA 	1
---------------------GGTCGTGTTTGGTGTATCAT 	43
----------------------GTCGTGTTTGGTGTATCATAC 	1
---------------------------------------------------------TATTGCACCTGTCCCGGCCGA 	8
---------------------------------------------------------TATTGCACCTGTCCCGGCCG 	465
---------------------------------------------------------TATTGCACCTGTCCCGGCC 	7
----------------------------------------------------------ATTGCACCTGTCCCGGCCG 	3

Overlaps with: MNEST024821 MNEST024822
Overlaps with miRBase pre-miRNAs: cin-mir-92d
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343286 TATTGCACCTGTCCCGGCCG GTCGTGTTTGGTGTATCATACT down 6 2


Secondary structure

TCATCTGTGGTGCCTTCGATAGGTCGTGTTTGGTGTATCATACTTAAGCAAACACAGTATTGCACCTGTCCCGGCCGATCGCGGTTACTTTTGTCA
---------------------GGTCGTGTTTGGTGTATCAT 	25
---------------------------------------------------------TATTGCACCTGTCCCGGCCG 	312
---------------------------------------------------------TATTGCACCTGTCCCGGCC 	5
----------------------------------------------------------ATTGCACCTGTCCCGGCCGA 	1

Overlaps with: MNEST024821 MNEST024822
Overlaps with miRBase pre-miRNAs: cin-mir-92d
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343285 TATTGCACCTGTCCCGGCCG GTCGTGTTTGGTGTATCATACT down 6 2


Secondary structure

TCATCTGTGGTGCCTTCGATAGGTCGTGTTTGGTGTATCATACTTAAGCAAACACAGTATTGCACCTGTCCCGGCCGATCGCGGTTACTTTTGTCA
---------------------GGTCGTGTTTGGTGTATCATACT 	5
---------------------GGTCGTGTTTGGTGTATCATAC 	6
---------------------GGTCGTGTTTGGTGTATCAT 	6
---------------------------------------------------------TATTGCACCTGTCCCGGCCGAT 	1
---------------------------------------------------------TATTGCACCTGTCCCGGCCGA 	1
---------------------------------------------------------TATTGCACCTGTCCCGGCCG 	565
---------------------------------------------------------TATTGCACCTGTCCCGGCC 	14
----------------------------------------------------------ATTGCACCTGTCCCGGCCG 	9

Overlaps with: MNEST024821 MNEST024822
Overlaps with miRBase pre-miRNAs: cin-mir-92d
HuntMi prediction: not a miRNA