miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATTGCACTCGTCCCGGCCTCC

selected species: Sus scrofa



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TATTGCACTCGTCCCGGCCTCC AGGGACGGGACGCGGTGCAGTGTT down 1 2


Secondary structure

GGGAGCGGGATCCCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGTGCAGTGTTGTTCTTTCCCCTGCCAATATTGCACTCGTCCCGGCCTCCGGCCCCCCCGGCCCCCCGGCCTCCCCCTC
--------------------------------AGGGACGGGACGCGGTGCAGTGTT 	3
--------------------------------AGGGACGGGACGCGGTGCAGTGT 	5
--------------------------------AGGGACGGGACGCGGTGCAGTGTTGT 	1
-------------------------------------------------------------------------TATTGCACTCGTCCCGGCCTCC 	11


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TATTGCACTCGTCCCGGCCTCC AGGGACGGGACGCGGTGCAGTGTT down 1 2


Secondary structure

GGGAGCGGGATCCCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGTGCAGTGTTGTTCTTTCCCCTGCCAATATTGCACTCGTCCCGGCCTCCGGCCCCCCCGGCCCCCCGGCCTCCCCCTC
--------------------------------AGGGACGGGACGCGGTGCAGTGTT 	7
--------------------------------AGGGACGGGACGCGGTGCAGTGT 	1
-------------------------------------------------------------------------TATTGCACTCGTCCCGGCCTCC 	14
-------------------------------------------------------------------------TATTGCACTCGTCCCGGCC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636848 TATTGCACTCGTCCCGGCCTCC AGGGACGGGACGCGGTGCAGTGTT down 1 2


Secondary structure

GGGAGCGGGATCCCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGTGCAGTGTTGTTCTTTCCCCTGCCAATATTGCACTCGTCCCGGCCTCCGGCCCCCCCGGCCCCCCGGCCTCCCCCTC
--------------------------------AGGGACGGGACGCGGTGCAGTGTT 	17
--------------------------------AGGGACGGGACGCGGTGCAGT 	5
--------------------------------AGGGACGGGACGCGGTGCAGTGT 	7
--------------------------------AGGGACGGGACGCGGTGCAG 	5
--------------------------------AGGGACGGGACGCGGTGCAGTGTTGT 	7
-------------------------------------------------------------------------TATTGCACTCGTCCCGGCCT 	9
-------------------------------------------------------------------------TATTGCACTCGTCCCGGCCTCCG 	1
-------------------------------------------------------------------------TATTGCACTCGTCCCGGCCTCC 	234
-------------------------------------------------------------------------TATTGCACTCGTCCCGGCC 	7
-------------------------------------------------------------------------TATTGCACTCGTCCCGGCCTC 	31
---------------------------------------------------------------------------TTGCACTCGTCCCGGCCTCC 	1


HuntMi prediction: true miRNA