miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TATTGCACTTCCCTAGACTG

selected species: Ciona intestinalis



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TATTGCACTTCCCTAGACTGG GGTGTGGGTGGGTGCATGAA down 2 1


Secondary structure

CAAAACTGCGGCGCTGCAGGTCGGTGTGGGTGGGTGCATGAATCGTTGTGAATTATTGCACTTCCCTAGACTGGTCTGCTTGTCGCATTTACT
-AAAACTGCGGCGCTGCAGGTC 	5
-AAAACTGCGGCGCTGCAGGT 	2
-AAAACTGCGGCGCTGCAGG 	7
---------------------CGGTGTGGGTGGGTGCATGAAT 	13
---------------------CGGTGTGGGTGGGTGCATGAA 	4
---------------------CGGTGTGGGTGGGTGCATGA 	43
---------------------CGGTGTGGGTGGGTGCATG 	146
----------------------GGTGTGGGTGGGTGCATGA 	3
-----------------------------------------------------TATTGCACTTCCCTAGACTGGTC 	64
-----------------------------------------------------TATTGCACTTCCCTAGACTGGT 	469
-----------------------------------------------------TATTGCACTTCCCTAGACTGG 	675
-----------------------------------------------------TATTGCACTTCCCTAGACTG 	3
-----------------------------------------------------TATTGCACTTCCCTAGACT 	1
------------------------------------------------------ATTGCACTTCCCTAGACTGGT 	2
-------------------------------------------------------TTGCACTTCCCTAGACTGGTCT 	1

Overlaps with: MNEST024823 MNEST024824
Overlaps with miRBase pre-miRNAs: cin-mir-92e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 TATTGCACTTCCCTAGACTGG GGTGTGGGTGGGTGCATGAA down 2 1


Secondary structure

CAAAACTGCGGCGCTGCAGGTCGGTGTGGGTGGGTGCATGAATCGTTGTGAATTATTGCACTTCCCTAGACTGGTCTGCTTGTCGCATTTACT
-AAAACTGCGGCGCTGCAGGTC 	15
-AAAACTGCGGCGCTGCAGGT 	9
-AAAACTGCGGCGCTGCAGG 	8
-----------------------------------------------------TATTGCACTTCCCTAGACTGGT 	286
-----------------------------------------------------TATTGCACTTCCCTAGACTGG 	772
-----------------------------------------------------TATTGCACTTCCCTAGACTG 	8
-----------------------------------------------------TATTGCACTTCCCTAGACT 	7
------------------------------------------------------ATTGCACTTCCCTAGACTGGT 	1
--------------------------------------------------------TGCACTTCCCTAGACTGGTCTG 	1

Overlaps with: MNEST024823 MNEST024824
Overlaps with miRBase pre-miRNAs: cin-mir-92e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 TATTGCACTTCCCTAGACTGGT CGGTGTGGGTGGGTGCATGAA down 2 1


Secondary structure

ACAAAACTGCGGCGCTGCAGGTCGGTGTGGGTGGGTGCATGAATCGTTGTGAATTATTGCACTTCCCTAGACTGGTCTGCTTGTCGCATTTACTT
--AAAACTGCGGCGCTGCAGGTC 	2
--AAAACTGCGGCGCTGCAGGT 	6
--AAAACTGCGGCGCTGCAGG 	10
----------------------CGGTGTGGGTGGGTGCATGAATC 	1
----------------------CGGTGTGGGTGGGTGCATGAAT 	14
----------------------CGGTGTGGGTGGGTGCATGAA 	1
----------------------CGGTGTGGGTGGGTGCATGA 	35
----------------------CGGTGTGGGTGGGTGCATG 	160
-----------------------GGTGTGGGTGGGTGCATGA 	1
------------------------------------------------------TATTGCACTTCCCTAGACTGGTC 	28
------------------------------------------------------TATTGCACTTCCCTAGACTGGT 	737
------------------------------------------------------TATTGCACTTCCCTAGACTGG 	121
------------------------------------------------------TATTGCACTTCCCTAGACTG 	4
------------------------------------------------------TATTGCACTTCCCTAGACT 	1
-------------------------------------------------------ATTGCACTTCCCTAGACTGGT 	1

Overlaps with: MNEST024823 MNEST024824
Overlaps with miRBase pre-miRNAs: cin-mir-92e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343286 TATTGCACTTCCCTAGACTG GTGTGGGTGGGTGCATGAA down 2 1


Secondary structure

AAAACTGCGGCGCTGCAGGTCGGTGTGGGTGGGTGCATGAATCGTTGTGAATTATTGCACTTCCCTAGACTGGTCTGCTTGTCGCATTTAC
AAAACTGCGGCGCTGCAGGT 	23
AAAACTGCGGCGCTGCAGG 	1
--------------------CGGTGTGGGTGGGTGCATGA 	6
----------------------------------------------------TATTGCACTTCCCTAGACTG 	93
----------------------------------------------------TATTGCACTTCCCTAGACT 	1

Overlaps with: MNEST024823 MNEST024824
Overlaps with miRBase pre-miRNAs: cin-mir-92e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343285 TATTGCACTTCCCTAGACTGGT CGGTGTGGGTGGGTGCATGAA down 2 1


Secondary structure

ACAAAACTGCGGCGCTGCAGGTCGGTGTGGGTGGGTGCATGAATCGTTGTGAATTATTGCACTTCCCTAGACTGGTCTGCTTGTCGCATTTACTT
--AAAACTGCGGCGCTGCAGGT 	2
--AAAACTGCGGCGCTGCAGG 	1
----------------------CGGTGTGGGTGGGTGCATGA 	2
----------------------CGGTGTGGGTGGGTGCATG 	14
------------------------------------------------------TATTGCACTTCCCTAGACTGGTC 	11
------------------------------------------------------TATTGCACTTCCCTAGACTGGT 	843
------------------------------------------------------TATTGCACTTCCCTAGACTGG 	226
------------------------------------------------------TATTGCACTTCCCTAGACTG 	62
------------------------------------------------------TATTGCACTTCCCTAGACT 	5
--------------------------------------------------------TTGCACTTCCCTAGACTGGT 	1

Overlaps with: MNEST024823 MNEST024824
Overlaps with miRBase pre-miRNAs: cin-mir-92e
HuntMi prediction: true miRNA