miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TATTGCACTTGTCCCGGCCTGT

selected species: Danio rerio



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATTGGTAGCAATGCT down 1 1


Secondary structure

TCCCTTTCTGCGCAGGTTGGGATTGGTAGCAATGCTGTGTGTTTTGAAGGTATTGCACTTGTCCCGGCCTGTAAAGGATTGT
-------------AGGTTGGGATTGGTAGCAATGCTGT 	1
-------------AGGTTGGGATTGGTAGCAATGCT 	40
-------------AGGTTGGGATTGGTAGCAATGC 	7
-------------AGGTTGGGATTGGTAGCAATG 	2
----------------------------------------------AAGGTATTGCACTTGTCCCGGC 	1
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTAAA 	1
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTAA 	1
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTA 	43
--------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	1172
--------------------------------------------------TATTGCACTTGTCCCGGCCTG 	16
--------------------------------------------------TATTGCACTTGTCCCGGCCT 	7
---------------------------------------------------ATTGCACTTGTCCCGGCCTGTA 	6
---------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	47
----------------------------------------------------TTGCACTTGTCCCGGCCTGT 	1


Overlaps with: MNEST034256
Overlaps with miRBase pre-miRNAs: dre-mir-92a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540644 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGCCGCAATGCT down 2 1


Secondary structure

GTCCCGTCAGATCACAGCATCCCTTTCTTTGCAGGTTGGGATCGGCCGCAATGCTCTGTGCTGGAAGTATTGCACTTGTCCCGGCCTGTGAAGAGCATGGGAAATTGTTCGGCTGCTT
----------------------------------------------------------------AAGTATTGCACTTGTCCCGG 	1
-----------------------------------------------------------------AGTATTGCACTTGTCCCGGCCTGT 	1
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	2
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	1172
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	16
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	7
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	47
---------------------------------------------------------------------TTGCACTTGTCCCGGCCTGT 	1


Overlaps with: MNEST034257
Overlaps with miRBase pre-miRNAs: dre-mir-92a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540645 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATTGGTAGCAATGCT down 1 1


Secondary structure

TCCCTTTCTGCGCAGGTTGGGATTGGTAGCAATGCTGTGTGTTTTGAAGGTATTGCACTTGTCCCGGCCTGTAAAGGATTGT
-------------AGGTTGGGATTGGTAGCAATGCT 	317
-------------AGGTTGGGATTGGTAGCAATG 	3
-------------AGGTTGGGATTGGTAGCAATGC 	22
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTAAA 	2
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTAA 	20
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTA 	442
--------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	5445
--------------------------------------------------TATTGCACTTGTCCCGGCCTG 	121
--------------------------------------------------TATTGCACTTGTCCCGGCCT 	16
--------------------------------------------------TATTGCACTTGTCCCGGCC 	5
---------------------------------------------------ATTGCACTTGTCCCGGCCTGTA 	12
---------------------------------------------------ATTGCACTTGTCCCGGCCTG 	1
---------------------------------------------------ATTGCACTTGTCCCGGCCT 	1
---------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	57
----------------------------------------------------TTGCACTTGTCCCGGCCTGTAA 	1


Overlaps with: MNEST034256
Overlaps with miRBase pre-miRNAs: dre-mir-92a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540645 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGCCGCAATGCT down 2 1


Secondary structure

GTCCCGTCAGATCACAGCATCCCTTTCTTTGCAGGTTGGGATCGGCCGCAATGCTCTGTGCTGGAAGTATTGCACTTGTCCCGGCCTGTGAAGAGCATGGGAAATTGTTCGGCTGCTT
--------------------------------AGGTTGGGATCGGCCGCAATGCT 	6
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTGA 	3
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	5445
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	121
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	16
-------------------------------------------------------------------TATTGCACTTGTCCCGGCC 	5
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	19
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGTGA 	1
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGTG 	1
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTG 	1
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCT 	1
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	57


Overlaps with: MNEST034257
Overlaps with miRBase pre-miRNAs: dre-mir-92a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540642 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATTGGTAGCAATGCT down 1 1


Secondary structure

TCCCTTTCTGCGCAGGTTGGGATTGGTAGCAATGCTGTGTGTTTTGAAGGTATTGCACTTGTCCCGGCCTGTAAAGGATTGT
-------------AGGTTGGGATTGGTAGCAATGCTGTG 	3
-------------AGGTTGGGATTGGTAGCAATGCTGT 	50
-------------AGGTTGGGATTGGTAGCAATGCTG 	1
-------------AGGTTGGGATTGGTAGCAATGCT 	236
-------------AGGTTGGGATTGGTAGCAATGC 	51
-------------AGGTTGGGATTGGTAGCAATG 	10
-------------AGGTTGGGATTGGTAGCAAT 	2
--------------GGTTGGGATTGGTAGCAATGCT 	1
-----------------TGGGATTGGTAGCAATGCT 	1
-------------------------------------TGTGTTTTGAAGGTATTGCACT 	1
-----------------------------------------TTTTGAAGGTATTGCACTTGTCC 	1
-----------------------------------------TTTTGAAGGTATTGCACTTGT 	1
------------------------------------------TTTGAAGGTATTGCACTTGTCCC 	2
------------------------------------------TTTGAAGGTATTGCACTTGTCC 	3
-------------------------------------------TTGAAGGTATTGCACTTGTCCCG 	1
-------------------------------------------TTGAAGGTATTGCACTTGTCCC 	3
-------------------------------------------TTGAAGGTATTGCACTTGTCC 	1
--------------------------------------------TGAAGGTATTGCACTTGTCCCGG 	1
--------------------------------------------TGAAGGTATTGCACTTGTCCCG 	1
--------------------------------------------TGAAGGTATTGCACTTGTCCC 	1
----------------------------------------------AAGGTATTGCACTTGTCCCGGCCTGT 	1
----------------------------------------------AAGGTATTGCACTTGTCCCGG 	1
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTAA 	5
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTA 	43
--------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	8116
--------------------------------------------------TATTGCACTTGTCCCGGCCTG 	153
--------------------------------------------------TATTGCACTTGTCCCGGCCT 	16
--------------------------------------------------TATTGCACTTGTCCCGGCC 	4
---------------------------------------------------ATTGCACTTGTCCCGGCCTGTA 	6
---------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	232
---------------------------------------------------ATTGCACTTGTCCCGGCCTG 	1
----------------------------------------------------TTGCACTTGTCCCGGCCTGT 	1


Overlaps with: MNEST034256
Overlaps with miRBase pre-miRNAs: dre-mir-92a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540642 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGCCGCAATGCT down 2 1


Secondary structure

GTCCCGTCAGATCACAGCATCCCTTTCTTTGCAGGTTGGGATCGGCCGCAATGCTCTGTGCTGGAAGTATTGCACTTGTCCCGGCCTGTGAAGAGCATGGGAAATTGTTCGGCTGCTT
--------------------------------AGGTTGGGATCGGCCGCAATGCTCTG 	3
--------------------------------AGGTTGGGATCGGCCGCAATGCTCT 	2
--------------------------------AGGTTGGGATCGGCCGCAATGCTC 	1
--------------------------------AGGTTGGGATCGGCCGCAATGCT 	98
--------------------------------AGGTTGGGATCGGCCGCAATGC 	19
--------------------------------AGGTTGGGATCGGCCGCAATG 	2
--------------------------------AGGTTGGGATCGGCCGCAA 	1
---------------------------------GGTTGGGATCGGCCGCAATGCTC 	1
---------------------------------GGTTGGGATCGGCCGCAATGCT 	1
----------------------------------GTTGGGATCGGCCGCAATGCTCTG 	1
----------------------------------GTTGGGATCGGCCGCAATGCTCT 	1
----------------------------------GTTGGGATCGGCCGCAATGCTC 	1
-----------------------------------TTGGGATCGGCCGCAATGCTCTG 	1
-----------------------------------TTGGGATCGGCCGCAATGCTCT 	9
------------------------------------TGGGATCGGCCGCAATGCTCT 	1
------------------------------------TGGGATCGGCCGCAATGCTC 	1
------------------------------------------------------TCTGTGCTGGAAGTATTGC 	1
---------------------------------------------------------GTGCTGGAAGTATTGCACTTGTCCC 	1
----------------------------------------------------------TGCTGGAAGTATTGCACTTGTC 	1
-----------------------------------------------------------GCTGGAAGTATTGCACTTGTCCCG 	1
-----------------------------------------------------------GCTGGAAGTATTGCACTTGTCCC 	1
-----------------------------------------------------------GCTGGAAGTATTGCACTTGTCC 	1
-----------------------------------------------------------GCTGGAAGTATTGCACTTGTC 	1
------------------------------------------------------------CTGGAAGTATTGCACTTGTCC 	1
-------------------------------------------------------------TGGAAGTATTGCACTTGTCCCGG 	1
-------------------------------------------------------------TGGAAGTATTGCACTTGTCC 	1
---------------------------------------------------------------GAAGTATTGCACTTGTCCCGGCCTGT 	1
---------------------------------------------------------------GAAGTATTGCACTTGTCCCGGC 	2
---------------------------------------------------------------GAAGTATTGCACTTGTCCCGG 	1
-----------------------------------------------------------------AGTATTGCACTTGTCCCGGCCTGT 	1
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	5
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	8116
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	153
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	16
-------------------------------------------------------------------TATTGCACTTGTCCCGGCC 	4
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	232
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTG 	1
---------------------------------------------------------------------TTGCACTTGTCCCGGCCTGT 	1


Overlaps with: MNEST034257
Overlaps with miRBase pre-miRNAs: dre-mir-92a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Danio rerio GSM540643 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATTGGTAGCAATGCT down 1 1


Secondary structure

TCCCTTTCTGCGCAGGTTGGGATTGGTAGCAATGCTGTGTGTTTTGAAGGTATTGCACTTGTCCCGGCCTGTAAAGGATTGT
-------------AGGTTGGGATTGGTAGCAATGCT 	76
-------------AGGTTGGGATTGGTAGCAATGC 	15
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTA 	29
--------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	3027
--------------------------------------------------TATTGCACTTGTCCCGGCCTG 	55
--------------------------------------------------TATTGCACTTGTCCCGGCCT 	2
--------------------------------------------------TATTGCACTTGTCCCGGCC 	1
---------------------------------------------------ATTGCACTTGTCCCGGCCTGTA 	1
---------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	38


Overlaps with: MNEST034256
Overlaps with miRBase pre-miRNAs: dre-mir-92a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Danio rerio GSM540643 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGCCGCAATGCT down 2 1


Secondary structure

GTCCCGTCAGATCACAGCATCCCTTTCTTTGCAGGTTGGGATCGGCCGCAATGCTCTGTGCTGGAAGTATTGCACTTGTCCCGGCCTGTGAAGAGCATGGGAAATTGTTCGGCTGCTT
--------------------------------AGGTTGGGATCGGCCGCAATGC 	1
--------------------------------AGGTTGGGATCGGCCGCAATGCT 	45
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	3027
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	55
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	2
-------------------------------------------------------------------TATTGCACTTGTCCCGGCC 	1
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	11
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	38


Overlaps with: MNEST034257
Overlaps with miRBase pre-miRNAs: dre-mir-92a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Danio rerio GSM540646 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATTGGTAGCAATGCT down 1 1


Secondary structure

TCCCTTTCTGCGCAGGTTGGGATTGGTAGCAATGCTGTGTGTTTTGAAGGTATTGCACTTGTCCCGGCCTGTAAAGGATTGT
--------TGCGCAGGTTGGGATTGGTAGCAA 	1
------------CAGGTTGGGATTGGTAGCAATGCT 	3
------------CAGGTTGGGATTGGTAGCAATG 	1
------------CAGGTTGGGATTGGTAGCAATGC 	2
-------------AGGTTGGGATTGGTAGCAATGCT 	8285
-------------AGGTTGGGATTGGTAGCAAT 	1
-------------AGGTTGGGATTGGTAGCAATG 	26
-------------AGGTTGGGATTGGTAGCAATGC 	242
--------------GGTTGGGATTGGTAGCAATGCT 	17
---------------GTTGGGATTGGTAGCAATGCT 	1
----------------TTGGGATTGGTAGCAATGCT 	1
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTAAA 	39
--------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	25886
--------------------------------------------------TATTGCACTTGTCCCGGCCTG 	379
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTA 	2763
--------------------------------------------------TATTGCACTTGTCCCGGCC 	3
--------------------------------------------------TATTGCACTTGTCCCGGCCTGTAA 	190
--------------------------------------------------TATTGCACTTGTCCCGGCCT 	34
---------------------------------------------------ATTGCACTTGTCCCGGCCTGTAA 	12
---------------------------------------------------ATTGCACTTGTCCCGGCCTG 	5
---------------------------------------------------ATTGCACTTGTCCCGGCCTGTAAA 	1
---------------------------------------------------ATTGCACTTGTCCCGGCCTGTA 	78
---------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	312
----------------------------------------------------TTGCACTTGTCCCGGCCTGT 	7


Overlaps with: MNEST034256
Overlaps with miRBase pre-miRNAs: dre-mir-92a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Danio rerio GSM540646 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGCCGCAATGCT down 2 1


Secondary structure

GTCCCGTCAGATCACAGCATCCCTTTCTTTGCAGGTTGGGATCGGCCGCAATGCTCTGTGCTGGAAGTATTGCACTTGTCCCGGCCTGTGAAGAGCATGGGAAATTGTTCGGCTGCTT
-------------------------------CAGGTTGGGATCGGCCGCAATGC 	1
--------------------------------AGGTTGGGATCGGCCGCAATGC 	15
--------------------------------AGGTTGGGATCGGCCGCAATGCT 	104
---------------------------------GGTTGGGATCGGCCGCAATGCT 	1
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTGAA 	2
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTGA 	29
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	25886
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	379
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	68
-------------------------------------------------------------------TATTGCACTTGTCCCGGCC 	3
-------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	34
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGTG 	12
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTG 	5
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGTGA 	7
--------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	312
---------------------------------------------------------------------TTGCACTTGTCCCGGCCTGT 	7


Overlaps with: MNEST034257
Overlaps with miRBase pre-miRNAs: dre-mir-92a-2
HuntMi prediction: true miRNA