miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TATTGCACTTGTCCCGGCCTGT

selected species: Sus scrofa



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGTTGCAATGCT down 1 1


Secondary structure

AAAGTAAGGGAAAATCAAACCCCTTTCTACACAGGTTGGGATCGGTTGCAATGCTGTGTTTCTGTATGGTATTGCACTTGTCCCGGCCTGTTGAGTTTGGTGGGGATTGTGACCAGAAGA
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	17
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	891
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTTG 	3
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTT 	112
---------------------------------------------------------------------TATTGCACTTGTCCCGGCC 	2
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	2
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	12
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGTT 	1

Overlaps with: MNEST026666
Overlaps with miRBase pre-miRNAs: hsa-mir-92a-1 ptr-mir-92-1 ggo-mir-92-1 lca-mir-92-1 ppy-mir-92-1 sla-mir-92-1 eca-mir-92a age-mir-92-1 ssc-mir-92a-1 mml-mir-92a-1 bta-mir-92a-1 ppa-mir-92-1 cfa-mir-92a-1 lla-mir-92-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636844 TATTGCACTTGTCCCGGCCTGT GGGTGGGGATTTGTTGCATTACT down 4 1


Secondary structure

GCCTTCGCACCCTTTCATCCGTGGGTGGGGATTTGTTGCATTACTTGTGGTGTGTATAAAGTATTGCACTTGTCCCGGCCTGTGGAAGAAAGGAGGATTTTA
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTGG 	2
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	17
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	891
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	4
-------------------------------------------------------------TATTGCACTTGTCCCGGCC 	2
-------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	2
--------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	12
--------------------------------------------------------------ATTGCACTTGTCCCGGCCTGTG 	1

Overlaps with: MNEST033951
Overlaps with miRBase pre-miRNAs: ssc-mir-92a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636847 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGTTGCAATGCT down 1 1


Secondary structure

AAAGTAAGGGAAAATCAAACCCCTTTCTACACAGGTTGGGATCGGTTGCAATGCTGTGTTTCTGTATGGTATTGCACTTGTCCCGGCCTGTTGAGTTTGGTGGGGATTGTGACCAGAAGA
--------------------------------AGGTTGGGATCGGTTGCAATGC 	1
---------------------------------GGTTGGGATCGGTTGCAATGCT 	1
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTT 	120
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	47
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	3
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	1136
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTTG 	6
---------------------------------------------------------------------TATTGCACTTGTCCCGGCC 	1
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	16
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGTT 	2

Overlaps with: MNEST026666
Overlaps with miRBase pre-miRNAs: hsa-mir-92a-1 ptr-mir-92-1 ggo-mir-92-1 lca-mir-92-1 ppy-mir-92-1 sla-mir-92-1 eca-mir-92a age-mir-92-1 ssc-mir-92a-1 mml-mir-92a-1 bta-mir-92a-1 ppa-mir-92-1 cfa-mir-92a-1 lla-mir-92-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636847 TATTGCACTTGTCCCGGCCTGT GGGTGGGGATTTGTTGCATTACT down 4 1


Secondary structure

GCCTTCGCACCCTTTCATCCGTGGGTGGGGATTTGTTGCATTACTTGTGGTGTGTATAAAGTATTGCACTTGTCCCGGCCTGTGGAAGAAAGGAGGATTTTA
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	47
-------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	3
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	1136
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	7
-------------------------------------------------------------TATTGCACTTGTCCCGGCC 	1
--------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	16

Overlaps with: MNEST033951
Overlaps with miRBase pre-miRNAs: ssc-mir-92a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636849 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGTTGCAATGCT down 1 1


Secondary structure

AAAGTAAGGGAAAATCAAACCCCTTTCTACACAGGTTGGGATCGGTTGCAATGCTGTGTTTCTGTATGGTATTGCACTTGTCCCGGCCTGTTGAGTTTGGTGGGGATTGTGACCAGAAGA
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTT 	19
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	900
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	9
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	4
---------------------------------------------------------------------TATTGCACTTGTCCCGGCC 	1
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	19
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGTT 	1
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCT 	1

Overlaps with: MNEST026666
Overlaps with miRBase pre-miRNAs: hsa-mir-92a-1 ptr-mir-92-1 ggo-mir-92-1 lca-mir-92-1 ppy-mir-92-1 sla-mir-92-1 eca-mir-92a age-mir-92-1 ssc-mir-92a-1 mml-mir-92a-1 bta-mir-92a-1 ppa-mir-92-1 cfa-mir-92a-1 lla-mir-92-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Sus scrofa GSM636849 TATTGCACTTGTCCCGGCCTGT GGGTGGGGATTTGTTGCATTACT down 4 1


Secondary structure

GCCTTCGCACCCTTTCATCCGTGGGTGGGGATTTGTTGCATTACTTGTGGTGTGTATAAAGTATTGCACTTGTCCCGGCCTGTGGAAGAAAGGAGGATTTTA
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	900
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	9
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	3
-------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	4
-------------------------------------------------------------TATTGCACTTGTCCCGGCC 	1
--------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	19
--------------------------------------------------------------ATTGCACTTGTCCCGGCCT 	1

Overlaps with: MNEST033951
Overlaps with miRBase pre-miRNAs: ssc-mir-92a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Sus scrofa GSM636848 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGTTGCAATGCT down 1 1


Secondary structure

AAAGTAAGGGAAAATCAAACCCCTTTCTACACAGGTTGGGATCGGTTGCAATGCTGTGTTTCTGTATGGTATTGCACTTGTCCCGGCCTGTTGAGTTTGGTGGGGATTGTGACCAGAAGA
--------------------------------AGGTTGGGATCGGTTGCAATGC 	4
--------------------------------AGGTTGGGATCGGTTGCAATGCT 	16
--------------------------------------------------------------------GTATTGCACTTGTCCCGGCCTG 	1
--------------------------------------------------------------------GTATTGCACTTGTCCCGGCCTGT 	2
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	293
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	11652
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTTG 	16
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	60
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTT 	537
---------------------------------------------------------------------TATTGCACTTGTCCCGGCC 	24
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	305
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCT 	1
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGTT 	19
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTG 	6
-----------------------------------------------------------------------TTGCACTTGTCCCGGCCTGTT 	1
-----------------------------------------------------------------------TTGCACTTGTCCCGGCCTGT 	16

Overlaps with: MNEST026666
Overlaps with miRBase pre-miRNAs: hsa-mir-92a-1 ptr-mir-92-1 ggo-mir-92-1 lca-mir-92-1 ppy-mir-92-1 sla-mir-92-1 eca-mir-92a age-mir-92-1 ssc-mir-92a-1 mml-mir-92a-1 bta-mir-92a-1 ppa-mir-92-1 cfa-mir-92a-1 lla-mir-92-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Sus scrofa GSM636848 TATTGCACTTGTCCCGGCCTGT GGGTGGGGATTTGTTGCATTACT down 4 1


Secondary structure

GCCTTCGCACCCTTTCATCCGTGGGTGGGGATTTGTTGCATTACTTGTGGTGTGTATAAAGTATTGCACTTGTCCCGGCCTGTGGAAGAAAGGAGGATTTTA
----------------------GGGTGGGGATTTGTTGCATTACT 	1
------------------------------------------------------------GTATTGCACTTGTCCCGGCCTG 	1
------------------------------------------------------------GTATTGCACTTGTCCCGGCCTGT 	2
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	293
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	11652
-------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	60
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTGG 	2
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTGGA 	4
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	59
-------------------------------------------------------------TATTGCACTTGTCCCGGCC 	24
--------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	305
--------------------------------------------------------------ATTGCACTTGTCCCGGCCT 	1
--------------------------------------------------------------ATTGCACTTGTCCCGGCCTG 	6
---------------------------------------------------------------TTGCACTTGTCCCGGCCTGT 	16

Overlaps with: MNEST033951
Overlaps with miRBase pre-miRNAs: ssc-mir-92a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Sus scrofa GSM636846 TATTGCACTTGTCCCGGCCTGT AGGTTGGGATCGGTTGCAATGCT down 1 1


Secondary structure

AAAGTAAGGGAAAATCAAACCCCTTTCTACACAGGTTGGGATCGGTTGCAATGCTGTGTTTCTGTATGGTATTGCACTTGTCCCGGCCTGTTGAGTTTGGTGGGGATTGTGACCAGAAGA
--------------------------------AGGTTGGGATCGGTTGCAATGCT 	1
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	390
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	5
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTT 	12
---------------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	2
---------------------------------------------------------------------TATTGCACTTGTCCCGGCC 	3
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	7
----------------------------------------------------------------------ATTGCACTTGTCCCGGCCTG 	1
-----------------------------------------------------------------------TTGCACTTGTCCCGGCCTGTT 	1

Overlaps with: MNEST026666
Overlaps with miRBase pre-miRNAs: hsa-mir-92a-1 ptr-mir-92-1 ggo-mir-92-1 lca-mir-92-1 ppy-mir-92-1 sla-mir-92-1 eca-mir-92a age-mir-92-1 ssc-mir-92a-1 mml-mir-92a-1 bta-mir-92a-1 ppa-mir-92-1 cfa-mir-92a-1 lla-mir-92-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Sus scrofa GSM636846 TATTGCACTTGTCCCGGCCTGT GGGTGGGGATTTGTTGCATTACT down 4 1


Secondary structure

GCCTTCGCACCCTTTCATCCGTGGGTGGGGATTTGTTGCATTACTTGTGGTGTGTATAAAGTATTGCACTTGTCCCGGCCTGTGGAAGAAAGGAGGATTTTA
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGT 	390
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTG 	5
-------------------------------------------------------------TATTGCACTTGTCCCGGCCTGTG 	2
-------------------------------------------------------------TATTGCACTTGTCCCGGCCT 	2
-------------------------------------------------------------TATTGCACTTGTCCCGGCC 	3
--------------------------------------------------------------ATTGCACTTGTCCCGGCCTGT 	7
--------------------------------------------------------------ATTGCACTTGTCCCGGCCTG 	1

Overlaps with: MNEST033951
Overlaps with miRBase pre-miRNAs: ssc-mir-92a-2
HuntMi prediction: true miRNA