miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATTGCACTTGTCCCGGTCTT

selected species: Ciona intestinalis



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TATTGCACTTGTCCCGGTCTT GGCTGGTACAAGAGCACGATC down 6 0


Secondary structure

CTTTAGTGAAGTTTGATTATATATTACTCGACGGCTGGTACAAGAGCACGATCGATTAGGATATTGCACTTGTCCCGGTCTTAGGGTGGTATAAAAAAGCAACTTATCACA
-------------------------------CGGCTGGTACAAGAGCACGAT 	2
-------------------------------CGGCTGGTACAAGAGCACG 	4
-------------------------------------------------------------TATTGCACTTGTCCCGGTCTTA 	6
-------------------------------------------------------------TATTGCACTTGTCCCGGTCTT 	80


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343284-14444 TATTGCACTTGTCCCGGTCTT GGCTGGTACAAGAGCACGATC down 6 0


Secondary structure

CTTTAGTGAAGTTTGATTATATATTACTCGACGGCTGGTACAAGAGCACGATCGATTAGGATATTGCACTTGTCCCGGTCTTAGGGTGGTATAAAAAAGCAACTTATCACA
-------------------------------CGGCTGGTACAAGAGCACGATC 	1
-------------------------------CGGCTGGTACAAGAGCACGAT 	2
-------------------------------CGGCTGGTACAAGAGCACG 	5
-------------------------------------------------------------TATTGCACTTGTCCCGGTCTTA 	93
-------------------------------------------------------------TATTGCACTTGTCCCGGTCTT 	192
-------------------------------------------------------------TATTGCACTTGTCCCGGTCT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343285 TATTGCACTTGTCCCGGTCTT GGCTGGTACAAGAGCACGATC down 6 0


Secondary structure

CTTTAGTGAAGTTTGATTATATATTACTCGACGGCTGGTACAAGAGCACGATCGATTAGGATATTGCACTTGTCCCGGTCTTAGGGTGGTATAAAAAAGCAACTTATCACA
------------------------------------------------------------ATATTGCACTTGTCCCGGTCTT 	1
-------------------------------------------------------------TATTGCACTTGTCCCGGTCTTAG 	1
-------------------------------------------------------------TATTGCACTTGTCCCGGTCTTA 	52
-------------------------------------------------------------TATTGCACTTGTCCCGGTCTT 	201
-------------------------------------------------------------TATTGCACTTGTCCCGGTCT 	14
-------------------------------------------------------------TATTGCACTTGTCCCGGTC 	1
--------------------------------------------------------------ATTGCACTTGTCCCGGTCTT 	2


HuntMi prediction: true miRNA