miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATTGCACTTTTACTGTACC

selected species: Ciona intestinalis



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TATTGCACTTTTACTGTACCC GTACACTGAATTGCACCAGC down 5 1


Secondary structure

TGTTCATTCATGGTACACTGAATTGCACCAGCTTATTATTCTGCTATTGCACTTTTACTGTACCCAGTATGTTA
-------------------------------------------CTATTGCACTTTTACTGTACC 	1
--------------------------------------------TATTGCACTTTTACTGTACCCA 	2
--------------------------------------------TATTGCACTTTTACTGTACCC 	108
--------------------------------------------TATTGCACTTTTACTGTACC 	10
--------------------------------------------TATTGCACTTTTACTGTAC 	12

Overlaps with: MNEST024968
Overlaps with miRBase pre-miRNAs: cin-mir-4009c
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 TATTGCACTTTTACTGTACCC GTACACTGAATTGCACCAGC down 5 1


Secondary structure

TGTTCATTCATGGTACACTGAATTGCACCAGCTTATTATTCTGCTATTGCACTTTTACTGTACCCAGTATGTTA
--------------------------------------------TATTGCACTTTTACTGTACCCA 	2
--------------------------------------------TATTGCACTTTTACTGTACCC 	121
--------------------------------------------TATTGCACTTTTACTGTACC 	19
--------------------------------------------TATTGCACTTTTACTGTAC 	10

Overlaps with: MNEST024968
Overlaps with miRBase pre-miRNAs: cin-mir-4009c
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 TATTGCACTTTTACTGTACCC GTACACTGAATTGCACCAGC down 5 1


Secondary structure

TGTTCATTCATGGTACACTGAATTGCACCAGCTTATTATTCTGCTATTGCACTTTTACTGTACCCAGTATGTTA
--------------------------------------------TATTGCACTTTTACTGTACCCA 	3
--------------------------------------------TATTGCACTTTTACTGTACCC 	7
--------------------------------------------TATTGCACTTTTACTGTACC 	2
--------------------------------------------TATTGCACTTTTACTGTAC 	1

Overlaps with: MNEST024968
Overlaps with miRBase pre-miRNAs: cin-mir-4009c
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343286 TATTGCACTTTTACTGTACC TACACTGAATTGCACCAGC down 4 1


Secondary structure

GTTCATTCATGGTACACTGAATTGCACCAGCTTATTATTCTGCTATTGCACTTTTACTGTACCCAGTATGTT
-------------------------------------------TATTGCACTTTTACTGTACC 	7

Overlaps with: MNEST024968
Overlaps with miRBase pre-miRNAs: cin-mir-4009c
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343285 TATTGCACTTTTACTGTACCC GTACACTGAATTGCACCAGC down 5 1


Secondary structure

TGTTCATTCATGGTACACTGAATTGCACCAGCTTATTATTCTGCTATTGCACTTTTACTGTACCCAGTATGTTA
--------------------------------------------TATTGCACTTTTACTGTACCCA 	6
--------------------------------------------TATTGCACTTTTACTGTACCC 	35
--------------------------------------------TATTGCACTTTTACTGTACC 	7
--------------------------------------------TATTGCACTTTTACTGTAC 	6

Overlaps with: MNEST024968
Overlaps with miRBase pre-miRNAs: cin-mir-4009c
HuntMi prediction: not a miRNA