miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TATTGGTGCGGTTCAATGAGA

selected species: Solanum lycopersicum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TATTGGTGCGGTTCAATGAGA TGATTGAGCCGCGCCAATATC up 1 0


Secondary structure

CAAATGGATGAATACACGAGATATTGGTGCGGTTCAATGAGAAAGCAGTACTTAAGAACATTTTTGAGTCTACTTTTTGATTGAGCCGCGCCAATATCACGTGTAGCTAAATCTTT
----------------CGAGATATTGGTGCGGTTCAA 	1
------------------AGATATTGGTGCGGTTCAATGA 	2
------------------AGATATTGGTGCGGTTCAATG 	2
------------------AGATATTGGTGCGGTTCAAT 	1
------------------AGATATTGGTGCGGTTCAA 	1
---------------------TATTGGTGCGGTTCAATGAGAA 	3
---------------------TATTGGTGCGGTTCAATGAGA 	11
----------------------ATTGGTGCGGTTCAATGAGAA 	1
----------------------ATTGGTGCGGTTCAATGAGA 	3
-----------------------TTGGTGCGGTTCAATGAGAAAG 	1
-----------------------------------------------------------------------------TGATTGAGCCGCGCCAATATCA 	2
-----------------------------------------------------------------------------TGATTGAGCCGCGCCAATATC 	4
-----------------------------------------------------------------------------TGATTGAGCCGCGCCAATAT 	1

Overlaps with: MNEST041540 MNEST054553
Overlaps with miRBase pre-miRNAs: sly-MIR171c
HuntMi prediction: true miRNA