miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TATTGTATGTTGTATTTGCAGT

selected species: Drosophila melanogaster



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM371638-15389 TATTGTATGTTGTATTTGCAGT GTGAGTATGGCTATACAAATCA down 2 2


Secondary structure

TACATTTAGCAATAAGTTAGACGTGAGTATGGCTATACAAATCATCTGGAACGTAAGTTCTAATGTATGTATTGTATGTTGTATTTGCAGTTTTATGATAGCAAAGGTCC
---------------------------------------------------------------------TATTGTATGTTGTATTTGCA 	5
---------------------------------------------------------------------TATTGTATGTTGTATTTGC 	1
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAGT 	65
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAGTT 	1
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAG 	40

Overlaps with: MNEST036614 MNEST036615
Overlaps with miRBase pre-miRNAs: dme-mir-2489
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399100-5263 TATTGTATGTTGTATTTGCAGT GTGAGTATGGCTATACAAATCA down 2 2


Secondary structure

TACATTTAGCAATAAGTTAGACGTGAGTATGGCTATACAAATCATCTGGAACGTAAGTTCTAATGTATGTATTGTATGTTGTATTTGCAGTTTTATGATAGCAAAGGTCC
----------------------GTGAGTATGGCTATACAAATCATC 	2
----------------------GTGAGTATGGCTATACAAATCA 	1
---------------------------------------------------------------TGTATGTATTGTATGTTGT 	1
---------------------------------------------------------------------TATTGTATGTTGTATTTGCA 	7
---------------------------------------------------------------------TATTGTATGTTGTATTTGC 	3
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAGT 	26
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAG 	14
----------------------------------------------------------------------ATTGTATGTTGTATTTGCAGT 	1

Overlaps with: MNEST036614 MNEST036615
Overlaps with miRBase pre-miRNAs: dme-mir-2489
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM322543-14323 TATTGTATGTTGTATTTGCAGT GTGAGTATGGCTATACAAATCA down 2 2


Secondary structure

TACATTTAGCAATAAGTTAGACGTGAGTATGGCTATACAAATCATCTGGAACGTAAGTTCTAATGTATGTATTGTATGTTGTATTTGCAGTTTTATGATAGCAAAGGTCC
---------------------------------------------------------------------TATTGTATGTTGTATTTGCA 	1
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAG 	2
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAGT 	26

Overlaps with: MNEST036614 MNEST036615
Overlaps with miRBase pre-miRNAs: dme-mir-2489
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399101-5265 TATTGTATGTTGTATTTGCAGT GTGAGTATGGCTATACAAATCA down 2 2


Secondary structure

TACATTTAGCAATAAGTTAGACGTGAGTATGGCTATACAAATCATCTGGAACGTAAGTTCTAATGTATGTATTGTATGTTGTATTTGCAGTTTTATGATAGCAAAGGTCC
---------------------------------------------------------------------TATTGTATGTTGTATTTGCA 	1
---------------------------------------------------------------------TATTGTATGTTGTATTTGC 	1
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAGT 	22
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAGTT 	1
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAG 	7
----------------------------------------------------------------------ATTGTATGTTGTATTTGCAG 	2

Overlaps with: MNEST036614 MNEST036615
Overlaps with miRBase pre-miRNAs: dme-mir-2489
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM385748-16264 TATTGTATGTTGTATTTGCAGT GTGAGTATGGCTATACAAATCA down 2 2


Secondary structure

TACATTTAGCAATAAGTTAGACGTGAGTATGGCTATACAAATCATCTGGAACGTAAGTTCTAATGTATGTATTGTATGTTGTATTTGCAGTTTTATGATAGCAAAGGTCC
---------------------------------------------------------------------TATTGTATGTTGTATTTGCA 	2
---------------------------------------------------------------------TATTGTATGTTGTATTTGCAGT 	8

Overlaps with: MNEST036614 MNEST036615
Overlaps with miRBase pre-miRNAs: dme-mir-2489
HuntMi prediction: true miRNA