miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCAATGCTCTCTGGAGCTTCT

selected species: Physcomitrella patens



18 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCAATGCTCTCTGGAGCTTCT AAGCTTCATAGGACATTGACT up 2 0


Secondary structure

AGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAGAACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCT 	229
---------------------TCAATGCTCTCTGGAGCTTCTG 	2
---------------------TCAATGCTCTCTGGAGCTTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCATAGGACATTGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGACT 	2
------------------------------------------------------------------------------------------------------------------------------------------------AGCTTCATAGGACATTGACT 	1

Overlaps with: MNEST039606 MNEST051469
Overlaps with miRBase pre-miRNAs: ppt-MIR1031b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TCAATGCTCTCTGGAGCTTCT AAGCTTCACAGAACATTGACT up 2 0


Secondary structure

ATTTCTGGATCATAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGTTACCACGTTGGAGAGAGTGTTGATTTGGACTCCCTGATAGGGCTTAGGCATCTTTCAGCCCTTGCTTCGGGTTTTCGTCCTTATTGGCCTCCCTCATTGGGCCTCAGAAGCTTCACAGAACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCT 	229
---------------------TCAATGCTCTCTGGAGCTTCTG 	2
---------------------TCAATGCTCTCTGGAGCTTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCACAGAACATTGA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGACT 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTCACAGAACATTGACT 	1

Overlaps with: MNEST039605 MNEST051468
Overlaps with miRBase pre-miRNAs: ppt-MIR1031a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313212 TCAATGCTCTCTGGAGCTTCT AAGCTTCATAGGACATTGACT up 2 0


Secondary structure

AGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAGAACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCT 	438
---------------------TCAATGCTCTCTGGAGCTTCTGTG 	1
---------------------TCAATGCTCTCTGGAGCTT 	4
---------------------TCAATGCTCTCTGGAGCTTCTG 	2
---------------------TCAATGCTCTCTGGAGCTTC 	5
----------------------CAATGCTCTCTGGAGCTTCT 	4
-----------------------AATGCTCTCTGGAGCTTCT 	8
------------------------ATGCTCTCTGGAGCTTCTGT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGACT 	10

Overlaps with: MNEST039606 MNEST051469
Overlaps with miRBase pre-miRNAs: ppt-MIR1031b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313212 TCAATGCTCTCTGGAGCTTCT AAGCTTCACAGAACATTGACT up 2 0


Secondary structure

ATTTCTGGATCATAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGTTACCACGTTGGAGAGAGTGTTGATTTGGACTCCCTGATAGGGCTTAGGCATCTTTCAGCCCTTGCTTCGGGTTTTCGTCCTTATTGGCCTCCCTCATTGGGCCTCAGAAGCTTCACAGAACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCT 	438
---------------------TCAATGCTCTCTGGAGCTTCTGTG 	1
---------------------TCAATGCTCTCTGGAGCTT 	4
---------------------TCAATGCTCTCTGGAGCTTCTG 	2
---------------------TCAATGCTCTCTGGAGCTTC 	5
----------------------CAATGCTCTCTGGAGCTTCT 	4
-----------------------AATGCTCTCTGGAGCTTCT 	8
------------------------ATGCTCTCTGGAGCTTCTGT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCACAGAACATTGA 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGACT 	5

Overlaps with: MNEST039605 MNEST051468
Overlaps with miRBase pre-miRNAs: ppt-MIR1031a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115095 TCAATGCTCTCTGGAGCTTCT AAGCTTCATAGGACATTGACT up 2 0


Secondary structure

AGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAGAACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCT 	78
---------------------TCAATGCTCTCTGGAGCTTCTG 	1

Overlaps with: MNEST039606 MNEST051469
Overlaps with miRBase pre-miRNAs: ppt-MIR1031b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115095 TCAATGCTCTCTGGAGCTTCT AAGCTTCACAGAACATTGACT up 2 0


Secondary structure

ATTTCTGGATCATAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGTTACCACGTTGGAGAGAGTGTTGATTTGGACTCCCTGATAGGGCTTAGGCATCTTTCAGCCCTTGCTTCGGGTTTTCGTCCTTATTGGCCTCCCTCATTGGGCCTCAGAAGCTTCACAGAACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCT 	78
---------------------TCAATGCTCTCTGGAGCTTCTG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCACAGAACATTGA 	6
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGACT 	6

Overlaps with: MNEST039605 MNEST051468
Overlaps with miRBase pre-miRNAs: ppt-MIR1031a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313213 TCAATGCTCTCTGGAGCTTCT AAGCTTCATAGGACATTGACT up 2 0


Secondary structure

AGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAGAACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGA
--------------------CTCAATGCTCTCTGGAGCTTC 	1
---------------------TCAATGCTCTCTGGAGCTT 	2
---------------------TCAATGCTCTCTGGAGCTTCT 	482
---------------------TCAATGCTCTCTGGAGCTTCTG 	3
---------------------TCAATGCTCTCTGGAGCTTC 	3
----------------------CAATGCTCTCTGGAGCTTCT 	2
-----------------------AATGCTCTCTGGAGCTTCT 	2
-----------------------AATGCTCTCTGGAGCTTCTGTGCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------GAAGCTTCATAGGACATTGACTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGACT 	14

Overlaps with: MNEST039606 MNEST051469
Overlaps with miRBase pre-miRNAs: ppt-MIR1031b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313213 TCAATGCTCTCTGGAGCTTCT AAGCTTCACAGAACATTGACT up 2 0


Secondary structure

ATTTCTGGATCATAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGTTACCACGTTGGAGAGAGTGTTGATTTGGACTCCCTGATAGGGCTTAGGCATCTTTCAGCCCTTGCTTCGGGTTTTCGTCCTTATTGGCCTCCCTCATTGGGCCTCAGAAGCTTCACAGAACATTGACTTGATTTGTGACCCTGTGA
--------------------CTCAATGCTCTCTGGAGCTTC 	1
---------------------TCAATGCTCTCTGGAGCTT 	2
---------------------TCAATGCTCTCTGGAGCTTCT 	482
---------------------TCAATGCTCTCTGGAGCTTCTG 	3
---------------------TCAATGCTCTCTGGAGCTTC 	3
----------------------CAATGCTCTCTGGAGCTTCT 	2
-----------------------AATGCTCTCTGGAGCTTCT 	2
------------------------ATGCTCTCTGGAGCTTCTGTGTTAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGACT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTCACAGAACATTGACT 	2

Overlaps with: MNEST039605 MNEST051468
Overlaps with miRBase pre-miRNAs: ppt-MIR1031a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313215 TCAATGCTCTCTGGAGCTTCT AAGCTTCATAGGACATTGACT up 2 0


Secondary structure

AGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAGAACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCTG 	2
---------------------TCAATGCTCTCTGGAGCTTCT 	69
---------------------TCAATGCTCTCTGGAGCTTC 	1
-----------------------AATGCTCTCTGGAGCTTCTGT 	27
---------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCATAGGACATTGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------GAAGCTTCATAGGACATTGACT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGAC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGACT 	17

Overlaps with: MNEST039606 MNEST051469
Overlaps with miRBase pre-miRNAs: ppt-MIR1031b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313215 TCAATGCTCTCTGGAGCTTCT AAGCTTCACAGAACATTGACT up 2 0


Secondary structure

ATTTCTGGATCATAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGTTACCACGTTGGAGAGAGTGTTGATTTGGACTCCCTGATAGGGCTTAGGCATCTTTCAGCCCTTGCTTCGGGTTTTCGTCCTTATTGGCCTCCCTCATTGGGCCTCAGAAGCTTCACAGAACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCTG 	2
---------------------TCAATGCTCTCTGGAGCTTCT 	69
---------------------TCAATGCTCTCTGGAGCTTC 	1
-----------------------AATGCTCTCTGGAGCTTCTGT 	27
-------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCACAGAACATTGA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGAC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGACT 	17

Overlaps with: MNEST039605 MNEST051468
Overlaps with miRBase pre-miRNAs: ppt-MIR1031a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM115096 TCAATGCTCTCTGGAGCTTCT AAGCTTCATAGGACATTGACT up 2 0


Secondary structure

AGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAGAACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCT 	112
---------------------TCAATGCTCTCTGGAGCTTC 	1
----------------------CAATGCTCTCTGGAGCTTCT 	2
---------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCATAGGACATTGACT 	1

Overlaps with: MNEST039606 MNEST051469
Overlaps with miRBase pre-miRNAs: ppt-MIR1031b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM115096 TCAATGCTCTCTGGAGCTTCT AAGCTTCACAGAACATTGACT up 2 0


Secondary structure

ATTTCTGGATCATAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGTTACCACGTTGGAGAGAGTGTTGATTTGGACTCCCTGATAGGGCTTAGGCATCTTTCAGCCCTTGCTTCGGGTTTTCGTCCTTATTGGCCTCCCTCATTGGGCCTCAGAAGCTTCACAGAACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCT 	112
---------------------TCAATGCTCTCTGGAGCTTC 	1
----------------------CAATGCTCTCTGGAGCTTCT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCACAGAACATTGAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCACAGAACATTGA 	7
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGACT 	3

Overlaps with: MNEST039605 MNEST051468
Overlaps with miRBase pre-miRNAs: ppt-MIR1031a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313216 TCAATGCTCTCTGGAGCTTCT AAGCTTCATAGGACATTGACT up 2 0


Secondary structure

AGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAGAACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCTGT 	1
---------------------TCAATGCTCTCTGGAGCTT 	1
---------------------TCAATGCTCTCTGGAGCTTCT 	284
---------------------TCAATGCTCTCTGGAGCTTCTG 	14
---------------------TCAATGCTCTCTGGAGCTTC 	32
----------------------CAATGCTCTCTGGAGCTTCTGTG 	2
----------------------CAATGCTCTCTGGAGCTTCT 	1
-----------------------AATGCTCTCTGGAGCTTCT 	3
-----------------------AATGCTCTCTGGAGCTTCTGT 	2
-----------------------AATGCTCTCTGGAGCTTCTG 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGACT 	20
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGAC 	4
------------------------------------------------------------------------------------------------------------------------------------------------AGCTTCATAGGACATTGACTT 	1

Overlaps with: MNEST039606 MNEST051469
Overlaps with miRBase pre-miRNAs: ppt-MIR1031b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313216 TCAATGCTCTCTGGAGCTTCT AAGCTTCACAGAACATTGACT up 2 0


Secondary structure

ATTTCTGGATCATAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGTTACCACGTTGGAGAGAGTGTTGATTTGGACTCCCTGATAGGGCTTAGGCATCTTTCAGCCCTTGCTTCGGGTTTTCGTCCTTATTGGCCTCCCTCATTGGGCCTCAGAAGCTTCACAGAACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCTGT 	1
---------------------TCAATGCTCTCTGGAGCTT 	1
---------------------TCAATGCTCTCTGGAGCTTCT 	284
---------------------TCAATGCTCTCTGGAGCTTCTG 	14
---------------------TCAATGCTCTCTGGAGCTTC 	32
----------------------CAATGCTCTCTGGAGCTTCTGTG 	2
----------------------CAATGCTCTCTGGAGCTTCT 	1
-----------------------AATGCTCTCTGGAGCTTCT 	3
-----------------------AATGCTCTCTGGAGCTTCTGT 	2
-----------------------AATGCTCTCTGGAGCTTCTG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCACAGAACATTGA 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGACT 	12
----------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTCACAGAACATTGACT 	1

Overlaps with: MNEST039605 MNEST051468
Overlaps with miRBase pre-miRNAs: ppt-MIR1031a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313214 TCAATGCTCTCTGGAGCTTCT AAGCTTCATAGGACATTGACT up 2 0


Secondary structure

AGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAGAACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCTG 	1
---------------------TCAATGCTCTCTGGAGCTTCT 	141
-----------------------AATGCTCTCTGGAGCTTCT 	2
-----------------------AATGCTCTCTGGAGCTTCTGT 	57
------------------------ATGCTCTCTGGAGCTTCTGT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGACTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGAC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGACT 	22

Overlaps with: MNEST039606 MNEST051469
Overlaps with miRBase pre-miRNAs: ppt-MIR1031b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313214 TCAATGCTCTCTGGAGCTTCT AAGCTTCACAGAACATTGACT up 2 0


Secondary structure

ATTTCTGGATCATAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGTTACCACGTTGGAGAGAGTGTTGATTTGGACTCCCTGATAGGGCTTAGGCATCTTTCAGCCCTTGCTTCGGGTTTTCGTCCTTATTGGCCTCCCTCATTGGGCCTCAGAAGCTTCACAGAACATTGACTTGATTTGTGACCCTGTGA
---------------------TCAATGCTCTCTGGAGCTTCTG 	1
---------------------TCAATGCTCTCTGGAGCTTCT 	141
-----------------------AATGCTCTCTGGAGCTTCT 	2
-----------------------AATGCTCTCTGGAGCTTCTGT 	57
------------------------ATGCTCTCTGGAGCTTCTGT 	1
-----------------------------------------------------------------------------------------------------------------------------------------CCTCATTGGGCCTCAGAAGC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCACAGAACATTG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGACT 	20
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGAC 	1

Overlaps with: MNEST039605 MNEST051468
Overlaps with miRBase pre-miRNAs: ppt-MIR1031a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313217 TCAATGCTCTCTGGAGCTTCT AAGCTTCATAGGACATTGACT up 2 0


Secondary structure

AGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAGAACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGA
--------------------CTCAATGCTCTCTGGAGCTTCT 	1
---------------------TCAATGCTCTCTGGAGCTTCTGT 	1
---------------------TCAATGCTCTCTGGAGCTT 	1
---------------------TCAATGCTCTCTGGAGCTTCT 	255
---------------------TCAATGCTCTCTGGAGCTTC 	30
---------------------TCAATGCTCTCTGGAGCTTCTG 	11
----------------------CAATGCTCTCTGGAGCTTCTGT 	1
----------------------CAATGCTCTCTGGAGCTTCT 	2
-----------------------AATGCTCTCTGGAGCTTCTGT 	5
----------------------------------------------------------------------------------------------------------------------------------------------GAAGCTTCATAGGACATTGACT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCATAGGACATTGACT 	24

Overlaps with: MNEST039606 MNEST051469
Overlaps with miRBase pre-miRNAs: ppt-MIR1031b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313217 TCAATGCTCTCTGGAGCTTCT AAGCTTCACAGAACATTGACT up 2 0


Secondary structure

ATTTCTGGATCATAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGTTACCACGTTGGAGAGAGTGTTGATTTGGACTCCCTGATAGGGCTTAGGCATCTTTCAGCCCTTGCTTCGGGTTTTCGTCCTTATTGGCCTCCCTCATTGGGCCTCAGAAGCTTCACAGAACATTGACTTGATTTGTGACCCTGTGA
--------------------CTCAATGCTCTCTGGAGCTTCT 	1
---------------------TCAATGCTCTCTGGAGCTTCTGT 	1
---------------------TCAATGCTCTCTGGAGCTT 	1
---------------------TCAATGCTCTCTGGAGCTTCT 	255
---------------------TCAATGCTCTCTGGAGCTTC 	30
---------------------TCAATGCTCTCTGGAGCTTCTG 	11
----------------------CAATGCTCTCTGGAGCTTCTGT 	1
----------------------CAATGCTCTCTGGAGCTTCT 	2
-----------------------AATGCTCTCTGGAGCTTCTGT 	5
--------------------------------------------------------------GTGTTGATTTGGACTCCCTGATAGG 	1
-----------------------------------------------------------------------------------------------------------------------------------------CCTCATTGGGCCTCAGAAG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGCTTCACAGAACATTGA 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTCACAGAACATTGACT 	14
----------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTCACAGAACATTGACT 	1

Overlaps with: MNEST039605 MNEST051468
Overlaps with miRBase pre-miRNAs: ppt-MIR1031a
HuntMi prediction: true miRNA