miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCAATTCCGTAGTGCATTGCAG

selected species: Drosophila melanogaster

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TCAATTCCGTAGTGCATTGCAG	GCAAGCGCTGCGGATTTGGCA	up	1	1

Secondary structure

CATTACCCCGTGGAAGTTACTGTTTCTATATATTTCAAAAAGAGTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTTTCATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTCATCATCTGCTAGAGAAATGTGAAATTTGTAGTAACCATAAAAA
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCAGT 	127
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCA 	22
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCAG 	156
-------------------------------------------------------------TCAATTCCGTAGTGCATTG 	4
-------------------------------------------------------------TCAATTCCGTAGTGCATTGC 	7

Overlaps with: MNEST036481 MNEST036482
Overlaps with miRBase pre-miRNAs: dme-mir-932
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399106-16287	TCAATTCCGTAGTGCATTGCAG	GCAAGCGCTGCGGATTTGGCA	up	1	1

Secondary structure

CATTACCCCGTGGAAGTTACTGTTTCTATATATTTCAAAAAGAGTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTTTCATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTCATCATCTGCTAGAGAAATGTGAAATTTGTAGTAACCATAAAAA
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCAGT 	42
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCA 	9
-------------------------------------------------------------TCAATTCCGTAGTGCATTGC 	10
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCAG 	62
----------------------------------------------------------------------------------------------------TGCAAGCGCTGCGGATTTGGCA 	1

Overlaps with: MNEST036481 MNEST036482
Overlaps with miRBase pre-miRNAs: dme-mir-932
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM322543-14323	TCAATTCCGTAGTGCATTGCAG	GCAAGCGCTGCGGATTTGGCA	up	1	1

Secondary structure

CATTACCCCGTGGAAGTTACTGTTTCTATATATTTCAAAAAGAGTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTTTCATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTCATCATCTGCTAGAGAAATGTGAAATTTGTAGTAACCATAAAAA
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCAGT 	6588
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCA 	1832
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCAGTG 	3
-------------------------------------------------------------TCAATTCCGTAGTGCATTGC 	1198
-------------------------------------------------------------TCAATTCCGTAGTGCATTGCAG 	9631
-------------------------------------------------------------TCAATTCCGTAGTGCATTG 	242
--------------------------------------------------------------CAATTCCGTAGTGCATTGCA 	1
--------------------------------------------------------------CAATTCCGTAGTGCATTGCAG 	49
--------------------------------------------------------------CAATTCCGTAGTGCATTGCAGT 	12
---------------------------------------------------------------AATTCCGTAGTGCATTGCA 	2
---------------------------------------------------------------AATTCCGTAGTGCATTGCAG 	13
---------------------------------------------------------------AATTCCGTAGTGCATTGCAGT 	13
----------------------------------------------------------------------------------------------------TGCAAGCGCTGCGGATTTGGC 	25
----------------------------------------------------------------------------------------------------TGCAAGCGCTGCGGATTTGG 	23
----------------------------------------------------------------------------------------------------TGCAAGCGCTGCGGATTTGGCA 	102
-----------------------------------------------------------------------------------------------------GCAAGCGCTGCGGATTTGGCA 	1

Overlaps with: MNEST036481 MNEST036482
Overlaps with miRBase pre-miRNAs: dme-mir-932
HuntMi prediction: true miRNA