miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCACACCCAGGTTGAGTGAGTC

selected species: Drosophila melanogaster



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TCACACCCAGGTTGAGTGAGTC CTCACTCAAGGAGGTTGTGATG down 5 0


Secondary structure

ACTGGTGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCGAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAATGCTGCTAACTTTGCATCGGTTTCA
------------------------------------------CTCACTCAAGGAGGTTGTGATG 	1
-------------------------------------------TCACTCAAGGAGGTTGTGATGG 	2
------------------------------------------------------------------------------------TCACACCCAGGTTGAGTGAGT 	1
------------------------------------------------------------------------------------TCACACCCAGGTTGAGTGAGTC 	7
------------------------------------------------------------------------------------TCACACCCAGGTTGAGTGAG 	1

Overlaps with: MNEST036451 MNEST036452
Overlaps with miRBase pre-miRNAs: dsi-mir-307 der-mir-307 dme-mir-307a dse-mir-307 dps-mir-307b dya-mir-307 dme-mir-307b dan-mir-307
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM322543-14323 TCACACCCAGGTTGAGTGAGTC CTCACTCAAGGAGGTTGTGATG down 5 0


Secondary structure

ACTGGTGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCGAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAATGCTGCTAACTTTGCATCGGTTTCA
------------------------------------------CTCACTCAAGGAGGTTGTGAT 	5
-------------------------------------------TCACTCAAGGAGGTTGTGATGG 	6
------------------------------------------------------------------------------------TCACACCCAGGTTGAGTGAGTC 	8

Overlaps with: MNEST036451 MNEST036452
Overlaps with miRBase pre-miRNAs: dsi-mir-307 der-mir-307 dme-mir-307a dse-mir-307 dps-mir-307b dya-mir-307 dme-mir-307b dan-mir-307
HuntMi prediction: true miRNA