miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCACAGCTTTTTGTGTTTACA

selected species: Drosophila melanogaster

19 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM360257-14325	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
-----------------------------------------------TCACAGCTTTTTGTGTTTAC 	1
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	9
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	13
-------------------------------------------------ACAGCTTTTTGTGTTTACA 	1

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM466487_wt_total	TCACAGCTTTTTGTGTTTACA	TAAATATCTAAAGTTGAACT	down	3	1

Secondary structure

TCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGA
-----------GTAAATATCTAAAGTTGAAC 	1
-----------GTAAATATCTAAAGTTGAACT 	20
----------------------------------------------TCACAGCTTTTTGTGTTTA 	1
----------------------------------------------TCACAGCTTTTTGTGTTTAC 	6
----------------------------------------------TCACAGCTTTTTGTGTTTACA 	328
----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	107
-----------------------------------------------CACAGCTTTTTGTGTTTACAG 	1
-----------------------------------------------CACAGCTTTTTGTGTTTACA 	4
------------------------------------------------ACAGCTTTTTGTGTTTACA 	1
-------------------------------------------------CAGCTTTTTGTGTTTACAG 	1

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM360262-14327	TCACAGCTTTTTGTGTTTACA	TAAATATCTAAAGTTGAACT	down	3	1

Secondary structure

TCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGA
----------------------------------------------TCACAGCTTTTTGTGTTTACA 	46
----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	36

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM385822-16273	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
------------GTAAATATCTAAAGTTGAACT 	1
-----------------------------------------------TCACAGCTTTTTGTGTTTA 	7
-----------------------------------------------TCACAGCTTTTTGTGTTTAC 	37
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	105
-----------------------------------------------TCACAGCTTTTTGTGTTTACAGG 	2
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	219
-------------------------------------------------ACAGCTTTTTGTGTTTACA 	3
-------------------------------------------------ACAGCTTTTTGTGTTTACAG 	6

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM360256-14324	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
----------------------------------------------GTCACAGCTTTTTGTGTTTACA 	1
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	7
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	10

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM466494_r2d2_heterozygotes_untreated	TCACAGCTTTTTGTGTTTACA	TAAATATCTAAAGTTGAACT	down	3	1

Secondary structure

TCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGA
-----------GTAAATATCTAAAGTTGAAC 	1
-----------GTAAATATCTAAAGTTGAACT 	3
----------------------------------------------TCACAGCTTTTTGTGTTTAC 	11
----------------------------------------------TCACAGCTTTTTGTGTTTACA 	70
----------------------------------------------TCACAGCTTTTTGTGTTTACAGG 	1
----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	8

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM466496_r2d2_homozygotes_untreated	TCACAGCTTTTTGTGTTTACA	TAAATATCTAAAGTTGAACT	down	3	1

Secondary structure

TCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGA
-----------GTAAATATCTAAAGTTGAACT 	18
----------------------------------------------TCACAGCTTTTTGTGTTTA 	1
----------------------------------------------TCACAGCTTTTTGTGTTTAC 	9
----------------------------------------------TCACAGCTTTTTGTGTTTACA 	82
----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	4
------------------------------------------------ACAGCTTTTTGTGTTTACA 	1

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM286605-9793	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
------------GTAAATATCTAAAGTTGAACT 	12
-----------------------------------------------TCACAGCTTTTTGTGTTTACAGG 	1
-----------------------------------------------TCACAGCTTTTTGTGTTTAC 	7
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	22
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	62

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM343833-15151	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
------------GTAAATATCTAAAGTTGAAC 	1
------------GTAAATATCTAAAGTTGAACT 	11
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	20
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	21

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM343832-15149	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
------------GTAAATATCTAAAGTTGAAC 	2
------------GTAAATATCTAAAGTTGAACT 	8
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	17
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	29

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM399100-5263	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
------------GTAAATATCTAAAGTTGAAC 	1
------------GTAAATATCTAAAGTTGAACT 	14
-----------------------------------------------TCACAGCTTTTTGTGTTTA 	1
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	31
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	78
------------------------------------------------CACAGCTTTTTGTGTTTACAG 	2
-------------------------------------------------ACAGCTTTTTGTGTTTACA 	1

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM322543-14323	TCACAGCTTTTTGTGTTTACA	TAAATATCTAAAGTTGAACT	down	3	1

Secondary structure

TCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGA
-----------GTAAATATCTAAAGTTGAACT 	7
---------------------------------------------GTCACAGCTTTTTGTGTTTACA 	1
----------------------------------------------TCACAGCTTTTTGTGTTTA 	1
----------------------------------------------TCACAGCTTTTTGTGTTTAC 	129
----------------------------------------------TCACAGCTTTTTGTGTTTACA 	576
----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	222
-----------------------------------------------CACAGCTTTTTGTGTTTACA 	2

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Drosophila melanogaster	GSM286607-9796	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
------------GTAAATATCTAAAGTTGAACT 	2
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	40
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	54

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Drosophila melanogaster	GSM399101-5265	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
------------GTAAATATCTAAAGTTGAAC 	1
------------GTAAATATCTAAAGTTGAACT 	23
-----------------------------------------------TCACAGCTTTTTGTGTTTACAGG 	1
-----------------------------------------------TCACAGCTTTTTGTGTTTAC 	4
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	46
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	52
-------------------------------------------------ACAGCTTTTTGTGTTTACAG 	2

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Drosophila melanogaster	GSM286604-9792	TCACAGCTTTTTGTGTTTACA	TAAATATCTAAAGTTGAACT	down	3	1

Secondary structure

TCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGA
----------------------------------------------TCACAGCTTTTTGTGTTTA 	3
----------------------------------------------TCACAGCTTTTTGTGTTTAC 	12
----------------------------------------------TCACAGCTTTTTGTGTTTACA 	73
----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	35

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Drosophila melanogaster	GSM385744-16261	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
-----------------------------------------------TCACAGCTTTTTGTGTTTA 	4
-----------------------------------------------TCACAGCTTTTTGTGTTTAC 	81
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	156
-----------------------------------------------TCACAGCTTTTTGTGTTTACAGG 	1
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	284
------------------------------------------------CACAGCTTTTTGTGTTTACAG 	4
-------------------------------------------------ACAGCTTTTTGTGTTTACA 	1
-------------------------------------------------ACAGCTTTTTGTGTTTACAG 	11

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Drosophila melanogaster	GSM385748-16264	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
------------GTAAATATCTAAAGTTGAACTTG 	1
-----------------------------------------------TCACAGCTTTTTGTGTTTA 	8
-----------------------------------------------TCACAGCTTTTTGTGTTTACAGG 	1
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	574
-----------------------------------------------TCACAGCTTTTTGTGTTTAC 	152
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	327
------------------------------------------------CACAGCTTTTTGTGTTTACAG 	6
-------------------------------------------------ACAGCTTTTTGTGTTTACA 	1
-------------------------------------------------ACAGCTTTTTGTGTTTACAG 	24

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Drosophila melanogaster	GSM399110-16285	TCACAGCTTTTTGTGTTTACA	TAAATATCTAAAGTTGAACT	down	3	1

Secondary structure

TCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGA
-----------GTAAATATCTAAAGTTGAACT 	4
---------------------------------------------GTCACAGCTTTTTGTGTTTACA 	1
----------------------------------------------TCACAGCTTTTTGTGTTTA 	7
----------------------------------------------TCACAGCTTTTTGTGTTTAC 	70
----------------------------------------------TCACAGCTTTTTGTGTTTACA 	229
----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	116

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Drosophila melanogaster	GSM466492_dcr-2_homozygotes_untreated	TCACAGCTTTTTGTGTTTACAG	GTAAATATCTAAAGTTGAACT	down	4	1

Secondary structure

TTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAG
------------GTAAATATCTAAAGTTGAACT 	7
-----------------------------------------------TCACAGCTTTTTGTGTTTAC 	12
-----------------------------------------------TCACAGCTTTTTGTGTTTACA 	101
-----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	389
------------------------------------------------CACAGCTTTTTGTGTTTAC 	3
------------------------------------------------CACAGCTTTTTGTGTTTACA 	4
------------------------------------------------CACAGCTTTTTGTGTTTACAG 	8
-------------------------------------------------ACAGCTTTTTGTGTTTACA 	1
-------------------------------------------------ACAGCTTTTTGTGTTTACAG 	1
--------------------------------------------------CAGCTTTTTGTGTTTACAG 	1

Overlaps with: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008
HuntMi prediction: true miRNA