miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCACAGTGAACCGGTCTCTTT

selected species: Gallus gallus

6 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Gallus gallus	GSM523741_layer_clean_reads_field_16-30	TCACAGTGAACCGGTCTCTTT	GGGGGCCGTTACACTGTAAGA	down	1	2

Secondary structure

CACAGGAATGTCCAGCTGGAAGGGGGGCCGTTACACTGTAAGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTTCCTGCTGTGTCATGCCAC
-ACAGGAATGTCCAGCTGGAAG 	1
----------------------GGGGGCCGTTACACTGTAAGA 	5
----------------------GGGGGCCGTTACACTGTAAG 	1
----------------------GGGGGCCGTTACACTGTAAGAGA 	25
----------------------GGGGGCCGTTACACTGTAAGAG 	7
---------------------------------------------------------TCTCACAGTGAACCGGTCTCTTT 	1
----------------------------------------------------------CTCACAGTGAACCGGTCTCTTT 	4
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	5059
-----------------------------------------------------------TCACAGTGAACCGGTCTCT 	10
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTTC 	1
-----------------------------------------------------------TCACAGTGAACCGGTCTCTT 	99
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	2343
------------------------------------------------------------CACAGTGAACCGGTCTCTTTT 	3
------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	3
-------------------------------------------------------------ACAGTGAACCGGTCTCTTT 	3
-------------------------------------------------------------ACAGTGAACCGGTCTCTTTT 	2

Overlaps with: MNEST025946
Overlaps with miRBase pre-miRNAs: gga-mir-128-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Gallus gallus	GSM523741_layer_clean_reads_field_16-30	TCACAGTGAACCGGTCTCTTT	CGGGGCCGTAACACTGTCTGAGA	down	6	2

Secondary structure

CCTGACTTTGAGCTGTTGAATTCGGGGCCGTAACACTGTCTGAGAGGTTTATATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGGCTT
--TGACTTTGAGCTGTTGAATT 	1
----------------------CGGGGCCGTAACACTGTCTGA 	5
----------------------CGGGGCCGTAACACTGTCTGAGA 	2
-----------------------GGGGCCGTAACACTGTCTGAGA 	1
-------------------------------------------------------TCTCACAGTGAACCGGTCTCTTT 	1
--------------------------------------------------------CTCACAGTGAACCGGTCTCTTT 	4
---------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	5059
---------------------------------------------------------TCACAGTGAACCGGTCTCTTTTTC 	2
---------------------------------------------------------TCACAGTGAACCGGTCTCT 	10
---------------------------------------------------------TCACAGTGAACCGGTCTCTTTTT 	153
---------------------------------------------------------TCACAGTGAACCGGTCTCTT 	99
---------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	2343
----------------------------------------------------------CACAGTGAACCGGTCTCTTTT 	3
----------------------------------------------------------CACAGTGAACCGGTCTCTTT 	3
----------------------------------------------------------CACAGTGAACCGGTCTCTTTTT 	1
-----------------------------------------------------------ACAGTGAACCGGTCTCTTT 	3
-----------------------------------------------------------ACAGTGAACCGGTCTCTTTT 	2

Overlaps with: MNEST025945
Overlaps with miRBase pre-miRNAs: gga-mir-128-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Gallus gallus	GSM388803	TCACAGTGAACCGGTCTCTTT	GGGGGCCGTTACACTGTAAGA	down	1	2

Secondary structure

CACAGGAATGTCCAGCTGGAAGGGGGGCCGTTACACTGTAAGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTTCCTGCTGTGTCATGCCAC
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	81
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	671
-----------------------------------------------------------TCACAGTGAACCGGTCTCTT 	75
-----------------------------------------------------------TCACAGTGAACCGGTCTCT 	90
-------------------------------------------------------------ACAGTGAACCGGTCTCTTT 	33

Overlaps with: MNEST025946
Overlaps with miRBase pre-miRNAs: gga-mir-128-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Gallus gallus	GSM388803	TCACAGTGAACCGGTCTCTTT	CGGGGCCGTAACACTGTCTGAGA	down	6	2

Secondary structure

CCTGACTTTGAGCTGTTGAATTCGGGGCCGTAACACTGTCTGAGAGGTTTATATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGGCTT
---------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	81
---------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	671
---------------------------------------------------------TCACAGTGAACCGGTCTCTT 	75
---------------------------------------------------------TCACAGTGAACCGGTCTCT 	90
-----------------------------------------------------------ACAGTGAACCGGTCTCTTT 	33

Overlaps with: MNEST025945
Overlaps with miRBase pre-miRNAs: gga-mir-128-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Gallus gallus	GSM523740_broiler_clean_reads_field_16-30	TCACAGTGAACCGGTCTCTTT	GGGGGCCGTTACACTGTAAGA	down	1	2

Secondary structure

CACAGGAATGTCCAGCTGGAAGGGGGGCCGTTACACTGTAAGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTTCCTGCTGTGTCATGCCAC
CACAGGAATGTCCAGCTGGAAG 	1
-ACAGGAATGTCCAGCTGGAAG 	1
--CAGGAATGTCCAGCTGGAAG 	2
---AGGAATGTCCAGCTGGAAG 	1
----------------------GGGGGCCGTTACACTGTAAGA 	10
----------------------GGGGGCCGTTACACTGTAAGAGA 	6
----------------------GGGGGCCGTTACACTGTAAG 	2
---------------------------------------------------------TCTCACAGTGAACCGGTCTCTTT 	2
---------------------------------------------------------TCTCACAGTGAACCGGTCTCT 	1
-----------------------------------------------------------TCACAGTGAACCGGTCTCT 	153
-----------------------------------------------------------TCACAGTGAACCGGTCTCTT 	665
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTTC 	1
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	6669
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	1832
------------------------------------------------------------CACAGTGAACCGGTCTCTT 	1
------------------------------------------------------------CACAGTGAACCGGTCTCTTTT 	5
------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	19
-------------------------------------------------------------ACAGTGAACCGGTCTCTTT 	22
-------------------------------------------------------------ACAGTGAACCGGTCTCTTTT 	5

Overlaps with: MNEST025946
Overlaps with miRBase pre-miRNAs: gga-mir-128-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Gallus gallus	GSM523740_broiler_clean_reads_field_16-30	TCACAGTGAACCGGTCTCTTT	CGGGGCCGTAACACTGTCTGAGA	down	6	2

Secondary structure

CCTGACTTTGAGCTGTTGAATTCGGGGCCGTAACACTGTCTGAGAGGTTTATATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGGCTT
----------------------CGGGGCCGTAACACTGTCTGAG 	1
----------------------CGGGGCCGTAACACTGTCTGA 	3
----------------------CGGGGCCGTAACACTGTCTGAGA 	1
-------------------------------------------------------TCTCACAGTGAACCGGTCTCTTT 	2
-------------------------------------------------------TCTCACAGTGAACCGGTCTCT 	1
---------------------------------------------------------TCACAGTGAACCGGTCTCT 	153
---------------------------------------------------------TCACAGTGAACCGGTCTCTT 	665
---------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	6669
---------------------------------------------------------TCACAGTGAACCGGTCTCTTTTT 	166
---------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	1832
----------------------------------------------------------CACAGTGAACCGGTCTCTT 	1
----------------------------------------------------------CACAGTGAACCGGTCTCTTTTT 	3
----------------------------------------------------------CACAGTGAACCGGTCTCTTTT 	5
----------------------------------------------------------CACAGTGAACCGGTCTCTTT 	19
-----------------------------------------------------------ACAGTGAACCGGTCTCTTT 	22
-----------------------------------------------------------ACAGTGAACCGGTCTCTTTT 	5
-----------------------------------------------------------ACAGTGAACCGGTCTCTTTTT 	1

Overlaps with: MNEST025945
Overlaps with miRBase pre-miRNAs: gga-mir-128-1
HuntMi prediction: true miRNA