miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCACAGTGAACCGGTCTCTTT

selected species: Sus scrofa



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TCACAGTGAACCGGTCTCTTT GGGGGCCGAGGCACTGTCCGAGA down 3 2


Secondary structure

GCGGCCGCTGTGCAGTGGGAAGGGGGGCCGAGGCACTGTCCGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTCCCTACTGTGTCACACTCC
----------------------------------------------------------CTCACAGTGAACCGGTCTCT 	1
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	57
-----------------------------------------------------------TCACAGTGAACCGGTCTCT 	20
-----------------------------------------------------------TCACAGTGAACCGGTCTCTT 	16
------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	1

Overlaps with: MNEST033976
Overlaps with miRBase pre-miRNAs: bta-mir-128-2 ssc-mir-128-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636844 TCACAGTGAACCGGTCTCTTT CGGGGCCGTAGCACTGTCTGAGA down 6 2


Secondary structure

AATAATTGGCCTTGTTCCTGAGCTGTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGGCTTCTTTTTACTC
--------------------------------CGGGGCCGTAGCACTGTCTGAG 	1
------------------------------------------------------------------CTCACAGTGAACCGGTCTCT 	1
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	57
-------------------------------------------------------------------TCACAGTGAACCGGTCTCT 	20
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTT 	16
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	6
--------------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	1

Overlaps with: MNEST008139
Overlaps with miRBase pre-miRNAs: ptr-mir-128-1 eca-mir-128-2 cfa-mir-128-1 ppa-mir-128 mmu-mir-128-1 hsa-mir-128-1 bta-mir-128-1 rno-mir-128-1 ppy-mir-128-1 sla-mir-128 ssc-mir-128-1 mml-mir-128a age-mir-128
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636847 TCACAGTGAACCGGTCTCTTT GGGGGCCGAGGCACTGTCCGAGA down 3 2


Secondary structure

GCGGCCGCTGTGCAGTGGGAAGGGGGGCCGAGGCACTGTCCGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTCCCTACTGTGTCACACTCC
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	44
-----------------------------------------------------------TCACAGTGAACCGGTCTCT 	20
-----------------------------------------------------------TCACAGTGAACCGGTCTCTT 	12

Overlaps with: MNEST033976
Overlaps with miRBase pre-miRNAs: bta-mir-128-2 ssc-mir-128-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636847 TCACAGTGAACCGGTCTCTTT CGGGGCCGTAGCACTGTCTGAGA down 6 2


Secondary structure

AATAATTGGCCTTGTTCCTGAGCTGTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGGCTTCTTTTTACTC
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	44
-------------------------------------------------------------------TCACAGTGAACCGGTCTCT 	20
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTTTT 	1
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTT 	12
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	8

Overlaps with: MNEST008139
Overlaps with miRBase pre-miRNAs: ptr-mir-128-1 eca-mir-128-2 cfa-mir-128-1 ppa-mir-128 mmu-mir-128-1 hsa-mir-128-1 bta-mir-128-1 rno-mir-128-1 ppy-mir-128-1 sla-mir-128 ssc-mir-128-1 mml-mir-128a age-mir-128
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636849 TCACAGTGAACCGGTCTCTTT GGGGGCCGAGGCACTGTCCGAGA down 3 2


Secondary structure

GCGGCCGCTGTGCAGTGGGAAGGGGGGCCGAGGCACTGTCCGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTCCCTACTGTGTCACACTCC
----------------------------------------------------------CTCACAGTGAACCGGTCTCT 	1
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	905
-----------------------------------------------------------TCACAGTGAACCGGTCTCTT 	99
-----------------------------------------------------------TCACAGTGAACCGGTCTCT 	105
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTCC 	23
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTC 	547
------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	5
-------------------------------------------------------------ACAGTGAACCGGTCTCTTT 	4
-------------------------------------------------------------ACAGTGAACCGGTCTCTTTC 	5

Overlaps with: MNEST033976
Overlaps with miRBase pre-miRNAs: bta-mir-128-2 ssc-mir-128-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Sus scrofa GSM636849 TCACAGTGAACCGGTCTCTTT CGGGGCCGTAGCACTGTCTGAGA down 6 2


Secondary structure

AATAATTGGCCTTGTTCCTGAGCTGTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGGCTTCTTTTTACTC
--------------------------------CGGGGCCGTAGCACTGTCTGAG 	1
------------------------------------------------------------------CTCACAGTGAACCGGTCTCTTTTT 	1
------------------------------------------------------------------CTCACAGTGAACCGGTCTCT 	1
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	905
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTT 	99
-------------------------------------------------------------------TCACAGTGAACCGGTCTCT 	105
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTTTT 	53
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	423
--------------------------------------------------------------------CACAGTGAACCGGTCTCTTTT 	1
--------------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	5
---------------------------------------------------------------------ACAGTGAACCGGTCTCTTTT 	3
---------------------------------------------------------------------ACAGTGAACCGGTCTCTTT 	4
---------------------------------------------------------------------ACAGTGAACCGGTCTCTTTTT 	1

Overlaps with: MNEST008139
Overlaps with miRBase pre-miRNAs: ptr-mir-128-1 eca-mir-128-2 cfa-mir-128-1 ppa-mir-128 mmu-mir-128-1 hsa-mir-128-1 bta-mir-128-1 rno-mir-128-1 ppy-mir-128-1 sla-mir-128 ssc-mir-128-1 mml-mir-128a age-mir-128
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Sus scrofa GSM636848 TCACAGTGAACCGGTCTCTTT GGGGGCCGAGGCACTGTCCGAGA down 3 2


Secondary structure

GCGGCCGCTGTGCAGTGGGAAGGGGGGCCGAGGCACTGTCCGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTCCCTACTGTGTCACACTCC
----------------------------------------------------------CTCACAGTGAACCGGTCTCTT 	1
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	600
-----------------------------------------------------------TCACAGTGAACCGGTCTCT 	35
-----------------------------------------------------------TCACAGTGAACCGGTCTCTT 	62
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTC 	10
------------------------------------------------------------CACAGTGAACCGGTCTCTT 	1
------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	3
-------------------------------------------------------------ACAGTGAACCGGTCTCTTT 	9

Overlaps with: MNEST033976
Overlaps with miRBase pre-miRNAs: bta-mir-128-2 ssc-mir-128-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Sus scrofa GSM636848 TCACAGTGAACCGGTCTCTTT CGGGGCCGTAGCACTGTCTGAGA down 6 2


Secondary structure

AATAATTGGCCTTGTTCCTGAGCTGTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGGCTTCTTTTTACTC
-------------GTTCCTGAGCTGTTGGATT 	3
--------------------------------CGGGGCCGTAGCACTGTCTGAGA 	4
--------------------------------CGGGGCCGTAGCACTGTCTG 	1
--------------------------------CGGGGCCGTAGCACTGTCTGAG 	1
--------------------------------CGGGGCCGTAGCACTGTCTGA 	1
------------------------------------------------------------------CTCACAGTGAACCGGTCTCTT 	1
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	600
-------------------------------------------------------------------TCACAGTGAACCGGTCTCT 	35
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTTTT 	5
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTT 	62
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	87
--------------------------------------------------------------------CACAGTGAACCGGTCTCTT 	1
--------------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	3
---------------------------------------------------------------------ACAGTGAACCGGTCTCTTT 	9
---------------------------------------------------------------------ACAGTGAACCGGTCTCTTTT 	2

Overlaps with: MNEST008139
Overlaps with miRBase pre-miRNAs: ptr-mir-128-1 eca-mir-128-2 cfa-mir-128-1 ppa-mir-128 mmu-mir-128-1 hsa-mir-128-1 bta-mir-128-1 rno-mir-128-1 ppy-mir-128-1 sla-mir-128 ssc-mir-128-1 mml-mir-128a age-mir-128
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Sus scrofa GSM636846 TCACAGTGAACCGGTCTCTTT GGGGGCCGAGGCACTGTCCGAGA down 3 2


Secondary structure

GCGGCCGCTGTGCAGTGGGAAGGGGGGCCGAGGCACTGTCCGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTCCCTACTGTGTCACACTCC
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	610
-----------------------------------------------------------TCACAGTGAACCGGTCTCTT 	53
-----------------------------------------------------------TCACAGTGAACCGGTCTCT 	95
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTCC 	3
-----------------------------------------------------------TCACAGTGAACCGGTCTCTTTC 	319
------------------------------------------------------------CACAGTGAACCGGTCTCTTTC 	1
------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	3
-------------------------------------------------------------ACAGTGAACCGGTCTCTTT 	3
-------------------------------------------------------------ACAGTGAACCGGTCTCTTTC 	2

Overlaps with: MNEST033976
Overlaps with miRBase pre-miRNAs: bta-mir-128-2 ssc-mir-128-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Sus scrofa GSM636846 TCACAGTGAACCGGTCTCTTT CGGGGCCGTAGCACTGTCTGAGA down 6 2


Secondary structure

AATAATTGGCCTTGTTCCTGAGCTGTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGGCTTCTTTTTACTC
--------------------------------CGGGGCCGTAGCACTGTCTGAG 	1
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTT 	610
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTT 	53
-------------------------------------------------------------------TCACAGTGAACCGGTCTCT 	95
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTTTT 	20
-------------------------------------------------------------------TCACAGTGAACCGGTCTCTTTT 	229
--------------------------------------------------------------------CACAGTGAACCGGTCTCTTT 	3
---------------------------------------------------------------------ACAGTGAACCGGTCTCTTTTT 	1
---------------------------------------------------------------------ACAGTGAACCGGTCTCTTTT 	3
---------------------------------------------------------------------ACAGTGAACCGGTCTCTTT 	3

Overlaps with: MNEST008139
Overlaps with miRBase pre-miRNAs: ptr-mir-128-1 eca-mir-128-2 cfa-mir-128-1 ppa-mir-128 mmu-mir-128-1 hsa-mir-128-1 bta-mir-128-1 rno-mir-128-1 ppy-mir-128-1 sla-mir-128 ssc-mir-128-1 mml-mir-128a age-mir-128
HuntMi prediction: true miRNA