miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCACAGTGGAGGTATACCTT

selected species: Ciona intestinalis



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TCACAGTGGAGGTATACCTTG GTAGCATTCACTGTAACA up 6 1


Secondary structure

AGAGCCTGACGTCACAGTGGAGGTATACCTTGTTGTGTGACGTAACAACGGTAGCATTCACTGTAACACTAGGACG
-----------TCACAGTGGAGGTATACCTTGTT 	817
-----------TCACAGTGGAGGTATACCTTGT 	773
-----------TCACAGTGGAGGTATACCTTG 	1833
-----------TCACAGTGGAGGTATACCTT 	11
-----------TCACAGTGGAGGTATACCT 	15
------------CACAGTGGAGGTATACCTTGTT 	1
-------------ACAGTGGAGGTATACCTTGTTGT 	1
-------------ACAGTGGAGGTATACCTTGTTG 	12
-------------ACAGTGGAGGTATACCTTGTT 	9
-------------ACAGTGGAGGTATACCTTG 	1
----------------------------------------------AACGGTAGCATTCACTGTAAC 	1
-----------------------------------------------ACGGTAGCATTCACTGTAACACT 	1
-----------------------------------------------ACGGTAGCATTCACTGTAACAC 	5
-----------------------------------------------ACGGTAGCATTCACTGTAACA 	4
-----------------------------------------------ACGGTAGCATTCACTGTAAC 	11


Overlaps with: MNEST024975 MNEST024976
Overlaps with miRBase pre-miRNAs: cin-mir-4011b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 TCACAGTGGAGGTATACCTTG GTAGCATTCACTGTAACA up 6 1


Secondary structure

AGAGCCTGACGTCACAGTGGAGGTATACCTTGTTGTGTGACGTAACAACGGTAGCATTCACTGTAACACTAGGACG
-----------TCACAGTGGAGGTATACCTTGT 	1098
-----------TCACAGTGGAGGTATACCTTG 	2593
-----------TCACAGTGGAGGTATACCTT 	29
-----------TCACAGTGGAGGTATACCT 	23
------------CACAGTGGAGGTATACCTTGTT 	3
------------CACAGTGGAGGTATACCTTGT 	1
------------CACAGTGGAGGTATACCTTG 	1
-------------ACAGTGGAGGTATACCTTGTTG 	13
-------------ACAGTGGAGGTATACCTTGTT 	19
-------------ACAGTGGAGGTATACCTTGT 	1


Overlaps with: MNEST024975 MNEST024976
Overlaps with miRBase pre-miRNAs: cin-mir-4011b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 TCACAGTGGAGGTATACCTTGT GGTAGCATTCACTGTAACA up 4 3


Secondary structure

AGAGCCTGACGTCACAGTGGAGGTATACCTTGTTGTGTGACGTAACAACGGTAGCATTCACTGTAACACTAGGACG
-----------TCACAGTGGAGGTATACCTTGTT 	1480
-----------TCACAGTGGAGGTATACCTTGT 	3203
-----------TCACAGTGGAGGTATACCTTG 	907
-----------TCACAGTGGAGGTATACCTT 	26
-----------TCACAGTGGAGGTATACCT 	29
------------CACAGTGGAGGTATACCTTGTTG 	4
------------CACAGTGGAGGTATACCTTGTT 	4
-------------ACAGTGGAGGTATACCTTGTTGT 	2
-------------ACAGTGGAGGTATACCTTGTTG 	33
-------------ACAGTGGAGGTATACCTTG 	5
---------------AGTGGAGGTATACCTTGTTGT 	1
---------------AGTGGAGGTATACCTTGTTG 	1
----------------------------------------------AACGGTAGCATTCACTGTAAC 	4
----------------------------------------------AACGGTAGCATTCACTGTA 	1
-----------------------------------------------ACGGTAGCATTCACTGTAACACT 	2
-----------------------------------------------ACGGTAGCATTCACTGTAACAC 	22
-----------------------------------------------ACGGTAGCATTCACTGTAACA 	2
-----------------------------------------------ACGGTAGCATTCACTGTAAC 	26


Overlaps with: MNEST024975 MNEST024976
Overlaps with miRBase pre-miRNAs: cin-mir-4011b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343286 TCACAGTGGAGGTATACCTT GGTAGCATTCACTGTAACA up 6 1


Secondary structure

AGAGCCTGACGTCACAGTGGAGGTATACCTTGTTGTGTGACGTAACAACGGTAGCATTCACTGTAACACTAGGACG
-----------TCACAGTGGAGGTATACCTT 	495
-----------TCACAGTGGAGGTATACCT 	2
------------CACAGTGGAGGTATACCTTG 	1
-------------ACAGTGGAGGTATACCTTGT 	9
-----------------------------------------------ACGGTAGCATTCACTGTAAC 	35


Overlaps with: MNEST024975 MNEST024976
Overlaps with miRBase pre-miRNAs: cin-mir-4011b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343285 TCACAGTGGAGGTATACCTTGT GGTAGCATTCACTGTAACA up 4 3


Secondary structure

AGAGCCTGACGTCACAGTGGAGGTATACCTTGTTGTGTGACGTAACAACGGTAGCATTCACTGTAACACTAGGACG
-----------TCACAGTGGAGGTATACCTTGTT 	3348
-----------TCACAGTGGAGGTATACCTTGT 	6954
-----------TCACAGTGGAGGTATACCTTG 	1903
-----------TCACAGTGGAGGTATACCTT 	564
-----------TCACAGTGGAGGTATACCT 	57
------------CACAGTGGAGGTATACCTTGTTG 	1
------------CACAGTGGAGGTATACCTTGTT 	8
------------CACAGTGGAGGTATACCTTG 	4
-------------ACAGTGGAGGTATACCTTGTTGT 	6
-------------ACAGTGGAGGTATACCTTGTTG 	99
-------------ACAGTGGAGGTATACCTTGTT 	4
-------------ACAGTGGAGGTATACCTTGT 	3
-------------ACAGTGGAGGTATACCTTG 	2
--------------CAGTGGAGGTATACCTTGTTG 	1
-----------------------------------------------ACGGTAGCATTCACTGTAACAC 	1
-----------------------------------------------ACGGTAGCATTCACTGTAA 	1


Overlaps with: MNEST024975 MNEST024976
Overlaps with miRBase pre-miRNAs: cin-mir-4011b
HuntMi prediction: true miRNA