miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCACCGGGAGAAAAACTGGAGT

selected species: Caenorhabditis elegans

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Caenorhabditis elegans	GSM427344-5691	TCACCGGGAGAAAAACTGGAGT	TCCGGTTTTTTCCGTGGTGATA	down	0	2

Secondary structure

TTCTCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCATTCC
--------------------------------------------ACGCATCCAAAAGTCTCTA 	10
------------------------------------------------------------CTATCACCGGGAGAAAAACTGGAG 	1
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAGT 	3
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGT 	420
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAG 	70
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGTA 	3
---------------------------------------------------------------TCACCGGGAGAAAAACTGGA 	2
---------------------------------------------------------------TCACCGGGAGAAAAACTGG 	1
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAGT 	3
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAG 	1

Overlaps with: MNEST038272
Overlaps with miRBase pre-miRNAs: cel-mir-38
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Caenorhabditis elegans	GSM427332-5684	TCACCGGGAGAAAAACTGGAGT	TCCGGTTTTTTCCGTGGTGATA	down	0	2

Secondary structure

TTCTCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCATTCC
----------------------TCCGGTTTTTTCCGTGGTGATA 	1
--------------------------------------------ACGCATCCAAAAGTCTCTA 	22
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAGT 	23
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAG 	2
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGTA 	29
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGT 	1131
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAG 	165
---------------------------------------------------------------TCACCGGGAGAAAAACTGGA 	5
---------------------------------------------------------------TCACCGGGAGAAAAACTGG 	2
----------------------------------------------------------------CACCGGGAGAAAAACTGGAGT 	7
----------------------------------------------------------------CACCGGGAGAAAAACTGGAG 	2
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAGT 	8
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAG 	1
------------------------------------------------------------------CCGGGAGAAAAACTGGAGT 	2
-------------------------------------------------------------------CGGGAGAAAAACTGGAGTA 	1

Overlaps with: MNEST038272
Overlaps with miRBase pre-miRNAs: cel-mir-38
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Caenorhabditis elegans	GSM427346-5695	TCACCGGGAGAAAAACTGGAGT	TCCGGTTTTTTCCGTGGTGATA	down	0	2

Secondary structure

TTCTCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCATTCC
--------------------------------------------ACGCATCCAAAAGTCTCTA 	10
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAGT 	5
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGTA 	17
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGT 	534
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAG 	76
---------------------------------------------------------------TCACCGGGAGAAAAACTGGA 	1
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAGT 	8
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAG 	2

Overlaps with: MNEST038272
Overlaps with miRBase pre-miRNAs: cel-mir-38
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Caenorhabditis elegans	GSM427345-5693	TCACCGGGAGAAAAACTGGAGT	TCCGGTTTTTTCCGTGGTGATA	down	0	2

Secondary structure

TTCTCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCATTCC
----------------------TCCGGTTTTTTCCGTGGTGATA 	4
--------------------------------------------ACGCATCCAAAAGTCTCTA 	4
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAGT 	1
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGT 	212
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAG 	24
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGTA 	6
---------------------------------------------------------------TCACCGGGAGAAAAACTGG 	1
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAGT 	1

Overlaps with: MNEST038272
Overlaps with miRBase pre-miRNAs: cel-mir-38
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Caenorhabditis elegans	GSM427297-5679	TCACCGGGAGAAAAACTGGAGT	TCCGGTTTTTTCCGTGGTGATA	down	0	2

Secondary structure

TTCTCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCATTCC
--------------------------------------------ACGCATCCAAAAGTCTCTA 	5
--------------------------------------------ACGCATCCAAAAGTCTCTAT 	1
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAGT 	1
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGT 	148
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAG 	14
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGTA 	1
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAGT 	2

Overlaps with: MNEST038272
Overlaps with miRBase pre-miRNAs: cel-mir-38
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Caenorhabditis elegans	GSM297751-9445	TCACCGGGAGAAAAACTGGAGT	TCCGGTTTTTTCCGTGGTGATA	down	0	2

Secondary structure

TTCTCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCATTCC
-TCTCTGTGAGCCAGGTCCTGT 	2
---TCTGTGAGCCAGGTCCTGT 	1
----------------------TCCGGTTTTTTCCGTGGTGA 	2
----------------------TCCGGTTTTTTCCGTGGTGATA 	44
----------------------TCCGGTTTTTTCCGTGGTGAT 	7
--------------------------------------------ACGCATCCAAAAGTCTCTA 	13
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAGT 	1
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAG 	2
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAG 	24
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGTA 	3
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGT 	515
----------------------------------------------------------------CACCGGGAGAAAAACTGGAG 	3
------------------------------------------------------------------CCGGGAGAAAAACTGGAGT 	1

Overlaps with: MNEST038272
Overlaps with miRBase pre-miRNAs: cel-mir-38
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Caenorhabditis elegans	GSM297752-9446	TCACCGGGAGAAAAACTGGAGT	TCCGGTTTTTTCCGTGGTGATA	down	0	2

Secondary structure

TTCTCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCATTCC
--CTCTGTGAGCCAGGTCCTGT 	2
---TCTGTGAGCCAGGTCCTGT 	1
----------------------TCCGGTTTTTTCCGTGGTGATA 	30
----------------------TCCGGTTTTTTCCGTGGTGAT 	1
--------------------------------------------ACGCATCCAAAAGTCTCTA 	4
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAGT 	2
---------------------------------------------------------------TCACCGGGAGAAAAACTGGA 	1
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGT 	219
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGTA 	4
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAG 	8
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAGT 	1

Overlaps with: MNEST038272
Overlaps with miRBase pre-miRNAs: cel-mir-38
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Caenorhabditis elegans	GSM427301-5681	TCACCGGGAGAAAAACTGGAGT	TCCGGTTTTTTCCGTGGTGATA	down	0	2

Secondary structure

TTCTCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCATTCC
--------------------------------------------ACGCATCCAAAAGTCTCTA 	2
--------------------------------------------------------------ATCACCGGGAGAAAAACTGGAGT 	1
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGT 	125
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAG 	8
---------------------------------------------------------------TCACCGGGAGAAAAACTGGAGTA 	4
-----------------------------------------------------------------ACCGGGAGAAAAACTGGAGT 	3

Overlaps with: MNEST038272
Overlaps with miRBase pre-miRNAs: cel-mir-38
HuntMi prediction: true miRNA