miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCACCGGGTGAAAAATCACCTA

selected species: Caenorhabditis elegans



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM297751-9445 TCACCGGGTGAAAAATCACCTA GGTGGTTTTTCTCTGCAGTGATA down 1 3


Secondary structure

TTAAGTGGGTCCCAGAGACCTTGGTGGTTTTTCTCTGCAGTGATAGATACTTCTAACAACTCGCTATCACCGGGTGAAAAATCACCTAGGTCTGGAGCCTCCTGCTC
----------------------GGTGGTTTTTCTCTGCAGTGATA 	15
----------------------GGTGGTTTTTCTCTGCAGTGA 	2
------------------------TGGTTTTTCTCTGCAGTGAT 	2
-------------------------GGTTTTTCTCTGCAGTGATA 	1
--------------------------------------------AGATACTTCTAACAACTCGCTA 	1
---------------------------------------------GATACTTCTAACAACTCGCTA 	57
---------------------------------------------GATACTTCTAACAACTCGCTAT 	7
------------------------------------------------------------------TCACCGGGTGAAAAATCACCTA 	288
------------------------------------------------------------------TCACCGGGTGAAAAATCACCTAG 	1
-------------------------------------------------------------------CACCGGGTGAAAAATCACCTAG 	1
-------------------------------------------------------------------CACCGGGTGAAAAATCACCTA 	5
--------------------------------------------------------------------ACCGGGTGAAAAATCACCTA 	3
----------------------------------------------------------------------------------CACCTAGGTCTGGAGCCTC 	1

Overlaps with: MNEST038275 MNEST038276
Overlaps with miRBase pre-miRNAs: cel-mir-41
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM297752-9446 TCACCGGGTGAAAAATCACCTA GGTGGTTTTTCTCTGCAGTGATA down 1 3


Secondary structure

TTAAGTGGGTCCCAGAGACCTTGGTGGTTTTTCTCTGCAGTGATAGATACTTCTAACAACTCGCTATCACCGGGTGAAAAATCACCTAGGTCTGGAGCCTCCTGCTC
----------------------GGTGGTTTTTCTCTGCAGTGATA 	11
----------------------GGTGGTTTTTCTCTGCAGTGAT 	2
----------------------GGTGGTTTTTCTCTGCAGTGA 	1
------------------------TGGTTTTTCTCTGCAGTGATA 	1
--------------------------------------------AGATACTTCTAACAACTCGCTAT 	1
---------------------------------------------GATACTTCTAACAACTCGC 	1
---------------------------------------------GATACTTCTAACAACTCGCTA 	36
------------------------------------------------------------------TCACCGGGTGAAAAATCACC 	1
------------------------------------------------------------------TCACCGGGTGAAAAATCACCTA 	161
-------------------------------------------------------------------CACCGGGTGAAAAATCACCTA 	1

Overlaps with: MNEST038275 MNEST038276
Overlaps with miRBase pre-miRNAs: cel-mir-41
HuntMi prediction: true miRNA