miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCACCGGGTGAAAATTCGCATG

selected species: Caenorhabditis elegans

9 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Caenorhabditis elegans	GSM427344-5691	TCACCGGGTGAAAATTCGCATG	CGCCAATTTTCGCTTCAGTGCTA	down	4	1

Secondary structure

CTCCACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGAAAGA
----------------------CGCCAATTTTCGCTTCAGTGCTA 	5
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATG 	8964
---------------------------------------------------------------TCACCGGGTGAAAATTCGCAT 	165
---------------------------------------------------------------TCACCGGGTGAAAATTCGCA 	28
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATGG 	4
----------------------------------------------------------------CACCGGGTGAAAATTCGCATG 	3
-----------------------------------------------------------------ACCGGGTGAAAATTCGCATG 	50
-----------------------------------------------------------------ACCGGGTGAAAATTCGCAT 	1

Overlaps with: MNEST038270
Overlaps with miRBase pre-miRNAs: cel-mir-36
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Caenorhabditis elegans	GSM427332-5684	TCACCGGGTGAAAATTCGCATG	CGCCAATTTTCGCTTCAGTGCTA	down	4	1

Secondary structure

CTCCACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGAAAGA
----------------------CGCCAATTTTCGCTTCAGTGCTA 	78
----------------------CGCCAATTTTCGCTTCAGTGCT 	3
--------------------------------------------------------------ATCACCGGGTGAAAATTCGCATG 	1
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATG 	13924
---------------------------------------------------------------TCACCGGGTGAAAATTCGCAT 	259
---------------------------------------------------------------TCACCGGGTGAAAATTCGCA 	40
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATGG 	3
---------------------------------------------------------------TCACCGGGTGAAAATTCGC 	1
----------------------------------------------------------------CACCGGGTGAAAATTCGCATG 	47
-----------------------------------------------------------------ACCGGGTGAAAATTCGCATG 	49
------------------------------------------------------------------CCGGGTGAAAATTCGCATG 	2

Overlaps with: MNEST038270
Overlaps with miRBase pre-miRNAs: cel-mir-36
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Caenorhabditis elegans	GSM378784	TCACCGGGTGAAAATTCGCATG	CGCCAATTTTCGCTTCAGTGCTA	down	4	1

Secondary structure

CTCCACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGAAAGA
----------------------CGCCAATTTTCGCTTCAGTGCT 	1
----------------------CGCCAATTTTCGCTTCAGTGC 	2
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATG 	54
---------------------------------------------------------------TCACCGGGTGAAAATTCGCAT 	9

Overlaps with: MNEST038270
Overlaps with miRBase pre-miRNAs: cel-mir-36
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Caenorhabditis elegans	GSM427346-5695	TCACCGGGTGAAAATTCGCATG	CGCCAATTTTCGCTTCAGTGCTA	down	4	1

Secondary structure

CTCCACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGAAAGA
----------------------CGCCAATTTTCGCTTCAGTGCTA 	37
----------------------CGCCAATTTTCGCTTCAGTGCT 	3
-----------------------GCCAATTTTCGCTTCAGTGCTA 	1
--------------------------------------------------------------ATCACCGGGTGAAAATTCGCATG 	1
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATG 	7729
---------------------------------------------------------------TCACCGGGTGAAAATTCGCAT 	203
---------------------------------------------------------------TCACCGGGTGAAAATTCGCA 	38
----------------------------------------------------------------CACCGGGTGAAAATTCGCATG 	1
-----------------------------------------------------------------ACCGGGTGAAAATTCGCATG 	58
-----------------------------------------------------------------ACCGGGTGAAAATTCGCAT 	2

Overlaps with: MNEST038270
Overlaps with miRBase pre-miRNAs: cel-mir-36
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Caenorhabditis elegans	GSM427345-5693	TCACCGGGTGAAAATTCGCATG	CGCCAATTTTCGCTTCAGTGCTA	down	4	1

Secondary structure

CTCCACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGAAAGA
----------------------CGCCAATTTTCGCTTCAGTGCTA 	13
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATG 	3849
---------------------------------------------------------------TCACCGGGTGAAAATTCGCAT 	64
---------------------------------------------------------------TCACCGGGTGAAAATTCGCA 	13
----------------------------------------------------------------CACCGGGTGAAAATTCGCATG 	1
-----------------------------------------------------------------ACCGGGTGAAAATTCGCATG 	12

Overlaps with: MNEST038270
Overlaps with miRBase pre-miRNAs: cel-mir-36
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Caenorhabditis elegans	GSM427297-5679	TCACCGGGTGAAAATTCGCATG	CGCCAATTTTCGCTTCAGTGCTA	down	4	1

Secondary structure

CTCCACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGAAAGA
--------------------------------------------------------------ATCACCGGGTGAAAATTCGCATG 	1
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATGG 	3
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATG 	3686
---------------------------------------------------------------TCACCGGGTGAAAATTCGCAT 	43
---------------------------------------------------------------TCACCGGGTGAAAATTCGCA 	7
---------------------------------------------------------------TCACCGGGTGAAAATTCGC 	1
----------------------------------------------------------------CACCGGGTGAAAATTCGCATG 	3
-----------------------------------------------------------------ACCGGGTGAAAATTCGCATG 	24

Overlaps with: MNEST038270
Overlaps with miRBase pre-miRNAs: cel-mir-36
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Caenorhabditis elegans	GSM297751-9445	TCACCGGGTGAAAATTCGCATG	CGCCAATTTTCGCTTCAGTGCTA	down	4	1

Secondary structure

CTCCACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGAAAGA
----------------------CGCCAATTTTCGCTTCAGTGCT 	5
----------------------CGCCAATTTTCGCTTCAGTG 	1
----------------------CGCCAATTTTCGCTTCAGTGCTA 	67
--------------------------AATTTTCGCTTCAGTGCTA 	1
---------------------------------------------GACCATCCAAAGTGTCTAT 	1
---------------------------------------------------------------TCACCGGGTGAAAATTCGCA 	3
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATG 	2773
---------------------------------------------------------------TCACCGGGTGAAAATTCGCAT 	45
---------------------------------------------------------------TCACCGGGTGAAAATTCGC 	17
----------------------------------------------------------------CACCGGGTGAAAATTCGCATG 	2
-----------------------------------------------------------------ACCGGGTGAAAATTCGCATG 	5
------------------------------------------------------------------CCGGGTGAAAATTCGCATG 	2

Overlaps with: MNEST038270
Overlaps with miRBase pre-miRNAs: cel-mir-36
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Caenorhabditis elegans	GSM297752-9446	TCACCGGGTGAAAATTCGCATG	CGCCAATTTTCGCTTCAGTGCTA	down	4	1

Secondary structure

CTCCACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGAAAGA
----------------------CGCCAATTTTCGCTTCAGTGCT 	5
----------------------CGCCAATTTTCGCTTCAGTG 	2
----------------------CGCCAATTTTCGCTTCAGTGCTA 	70
-------------------------CAATTTTCGCTTCAGTGCTA 	1
--------------------------AATTTTCGCTTCAGTGCTA 	1
---------------------------------------------------------------TCACCGGGTGAAAATTCGC 	5
---------------------------------------------------------------TCACCGGGTGAAAATTCGCA 	4
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATG 	1833
---------------------------------------------------------------TCACCGGGTGAAAATTCGCAT 	39
----------------------------------------------------------------CACCGGGTGAAAATTCGCATG 	2
-----------------------------------------------------------------ACCGGGTGAAAATTCGCATG 	1
------------------------------------------------------------------CCGGGTGAAAATTCGCATG 	3

Overlaps with: MNEST038270
Overlaps with miRBase pre-miRNAs: cel-mir-36
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Caenorhabditis elegans	GSM427301-5681	TCACCGGGTGAAAATTCGCATG	CGCCAATTTTCGCTTCAGTGCTA	down	4	1

Secondary structure

CTCCACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGAAAGA
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATG 	2893
---------------------------------------------------------------TCACCGGGTGAAAATTCGCAT 	30
---------------------------------------------------------------TCACCGGGTGAAAATTCGCA 	14
---------------------------------------------------------------TCACCGGGTGAAAATTCGCATGG 	4
----------------------------------------------------------------CACCGGGTGAAAATTCGCATG 	1
-----------------------------------------------------------------ACCGGGTGAAAATTCGCATG 	7
-----------------------------------------------------------------ACCGGGTGAAAATTCGCAT 	1

Overlaps with: MNEST038270
Overlaps with miRBase pre-miRNAs: cel-mir-36
HuntMi prediction: true miRNA