miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCACCGGGTGAACACTTGCAGT

selected species: Caenorhabditis elegans



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TCACCGGGTGAACACTTGCAGT TGTGGGTGTCCGTTGCGGTGCTA down 5 1


Secondary structure

ATTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCTCTG
----------------------TGTGGGTGTCCGTTGCGGTGCTA 	6
----------------------TGTGGGTGTCCGTTGCGGTGCT 	3
----------------------TGTGGGTGTCCGTTGCGGTG 	1
------------------------------------------------------------ATCACCGGGTGAACACTTGCAGT 	146
------------------------------------------------------------ATCACCGGGTGAACACTTGCAG 	19
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTG 	55
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGT 	209620
-------------------------------------------------------------TCACCGGGTGAACACTTGCAG 	9568
-------------------------------------------------------------TCACCGGGTGAACACTTGCA 	3771
-------------------------------------------------------------TCACCGGGTGAACACTTGC 	47
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTGG 	5
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTGGT 	2
--------------------------------------------------------------CACCGGGTGAACACTTGCAGTG 	8
--------------------------------------------------------------CACCGGGTGAACACTTGCAGT 	417
--------------------------------------------------------------CACCGGGTGAACACTTGCAG 	30
--------------------------------------------------------------CACCGGGTGAACACTTGCA 	1
---------------------------------------------------------------ACCGGGTGAACACTTGCAGT 	1708
---------------------------------------------------------------ACCGGGTGAACACTTGCAG 	77
----------------------------------------------------------------CCGGGTGAACACTTGCAGT 	2


Overlaps with: MNEST038271
Overlaps with miRBase pre-miRNAs: cel-mir-37
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TCACCGGGTGAACACTTGCAGT TGTGGGTGTCCGTTGCGGTGCTA down 5 1


Secondary structure

ATTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCTCTG
--------------------AGTGTGGGTGTCCGTTGCGGTGCT 	1
----------------------TGTGGGTGTCCGTTGCGGTGCTA 	14
----------------------TGTGGGTGTCCGTTGCGGTGCT 	1
------------------------------------------------------------ATCACCGGGTGAACACTTGCAGT 	363
------------------------------------------------------------ATCACCGGGTGAACACTTGCAG 	30
------------------------------------------------------------ATCACCGGGTGAACACTTGCA 	2
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGT 	129517
-------------------------------------------------------------TCACCGGGTGAACACTTGCAG 	6860
-------------------------------------------------------------TCACCGGGTGAACACTTGCA 	1810
-------------------------------------------------------------TCACCGGGTGAACACTTGC 	27
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTG 	16
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTGG 	1
--------------------------------------------------------------CACCGGGTGAACACTTGCAGTG 	44
--------------------------------------------------------------CACCGGGTGAACACTTGCAGT 	1315
--------------------------------------------------------------CACCGGGTGAACACTTGCAG 	309
--------------------------------------------------------------CACCGGGTGAACACTTGCA 	12
--------------------------------------------------------------CACCGGGTGAACACTTGCAGTGG 	4
---------------------------------------------------------------ACCGGGTGAACACTTGCAGT 	690
---------------------------------------------------------------ACCGGGTGAACACTTGCAG 	58
---------------------------------------------------------------ACCGGGTGAACACTTGCAGTG 	1
----------------------------------------------------------------CCGGGTGAACACTTGCAGT 	30


Overlaps with: MNEST038271
Overlaps with miRBase pre-miRNAs: cel-mir-37
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM378784 TCACCGGGTGAACACTTGCAGT TGTGGGTGTCCGTTGCGGTGCTA down 5 1


Secondary structure

ATTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCTCTG
----------------------TGTGGGTGTCCGTTGCGGTGCT 	3
----------------------TGTGGGTGTCCGTTGCGGTGC 	1
------------------------------------------------------------ATCACCGGGTGAACACTTGCAGT 	1
------------------------------------------------------------ATCACCGGGTGAACACTTGCAG 	1
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTG 	4
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGT 	1599
-------------------------------------------------------------TCACCGGGTGAACACTTGCAG 	79
-------------------------------------------------------------TCACCGGGTGAACACTTGC 	6
--------------------------------------------------------------CACCGGGTGAACACTTGCAGT 	1
--------------------------------------------------------------CACCGGGTGAACACTTGCAG 	1


Overlaps with: MNEST038271
Overlaps with miRBase pre-miRNAs: cel-mir-37
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427346-5695 TCACCGGGTGAACACTTGCAGT TGTGGGTGTCCGTTGCGGTGCTA down 5 1


Secondary structure

ATTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCTCTG
---------------------GTGTGGGTGTCCGTTGCGGTGC 	1
----------------------TGTGGGTGTCCGTTGCGGTGCTA 	63
----------------------TGTGGGTGTCCGTTGCGGTGCT 	16
----------------------TGTGGGTGTCCGTTGCGGTGC 	2
----------------------TGTGGGTGTCCGTTGCGGTG 	1
-----------------------------------------------------------TATCACCGGGTGAACACTTGCAG 	2
------------------------------------------------------------ATCACCGGGTGAACACTTGCAGT 	95
------------------------------------------------------------ATCACCGGGTGAACACTTGCAG 	13
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGT 	39747
-------------------------------------------------------------TCACCGGGTGAACACTTGCAG 	2413
-------------------------------------------------------------TCACCGGGTGAACACTTGCA 	390
-------------------------------------------------------------TCACCGGGTGAACACTTGC 	10
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTG 	2
--------------------------------------------------------------CACCGGGTGAACACTTGCAGTG 	4
--------------------------------------------------------------CACCGGGTGAACACTTGCAGT 	106
--------------------------------------------------------------CACCGGGTGAACACTTGCAG 	10
---------------------------------------------------------------ACCGGGTGAACACTTGCAGT 	243
---------------------------------------------------------------ACCGGGTGAACACTTGCAG 	13


Overlaps with: MNEST038271
Overlaps with miRBase pre-miRNAs: cel-mir-37
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427345-5693 TCACCGGGTGAACACTTGCAGT TGTGGGTGTCCGTTGCGGTGCTA down 5 1


Secondary structure

ATTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCTCTG
--------------------AGTGTGGGTGTCCGTTGCGGTGCT 	1
----------------------TGTGGGTGTCCGTTGCGGTGCTA 	17
----------------------TGTGGGTGTCCGTTGCGGTGCT 	5
----------------------TGTGGGTGTCCGTTGCGGTGC 	2
------------------------------------------------------------ATCACCGGGTGAACACTTGCAGT 	43
------------------------------------------------------------ATCACCGGGTGAACACTTGCAG 	4
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGT 	29951
-------------------------------------------------------------TCACCGGGTGAACACTTGCAG 	1142
-------------------------------------------------------------TCACCGGGTGAACACTTGCA 	141
-------------------------------------------------------------TCACCGGGTGAACACTTGC 	12
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTG 	5
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTGG 	1
--------------------------------------------------------------CACCGGGTGAACACTTGCAGT 	50
--------------------------------------------------------------CACCGGGTGAACACTTGCAG 	57
--------------------------------------------------------------CACCGGGTGAACACTTGCA 	3
---------------------------------------------------------------ACCGGGTGAACACTTGCAGT 	183
---------------------------------------------------------------ACCGGGTGAACACTTGCAG 	9
----------------------------------------------------------------CCGGGTGAACACTTGCAGT 	5


Overlaps with: MNEST038271
Overlaps with miRBase pre-miRNAs: cel-mir-37
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM427297-5679 TCACCGGGTGAACACTTGCAGT TGTGGGTGTCCGTTGCGGTGCTA down 5 1


Secondary structure

ATTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCTCTG
----------------------TGTGGGTGTCCGTTGCGGTGCTA 	1
------------------------------------------------------------ATCACCGGGTGAACACTTGCAGT 	22
------------------------------------------------------------ATCACCGGGTGAACACTTGCAG 	2
------------------------------------------------------------ATCACCGGGTGAACACTTGCA 	1
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTG 	20
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGT 	72850
-------------------------------------------------------------TCACCGGGTGAACACTTGCAG 	1490
-------------------------------------------------------------TCACCGGGTGAACACTTGCA 	196
-------------------------------------------------------------TCACCGGGTGAACACTTGC 	6
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTGGT 	1
--------------------------------------------------------------CACCGGGTGAACACTTGCAGT 	50
--------------------------------------------------------------CACCGGGTGAACACTTGCAG 	1
---------------------------------------------------------------ACCGGGTGAACACTTGCAGT 	494
---------------------------------------------------------------ACCGGGTGAACACTTGCAG 	9
----------------------------------------------------------------CCGGGTGAACACTTGCAGT 	3


Overlaps with: MNEST038271
Overlaps with miRBase pre-miRNAs: cel-mir-37
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297751-9445 TCACCGGGTGAACACTTGCAGT TGTGGGTGTCCGTTGCGGTGCTA down 5 1


Secondary structure

ATTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCTCTG
----------------------TGTGGGTGTCCGTTGCGGTGCTA 	5
-----------------------GTGGGTGTCCGTTGCGGTGCTA 	1
------------------------------------------------------------ATCACCGGGTGAACACTTGCAGT 	1
-------------------------------------------------------------TCACCGGGTGAACACTTGCAG 	22
-------------------------------------------------------------TCACCGGGTGAACACTTGCA 	12
-------------------------------------------------------------TCACCGGGTGAACACTTGC 	15
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGT 	1472
--------------------------------------------------------------CACCGGGTGAACACTTGCAGT 	2
--------------------------------------------------------------CACCGGGTGAACACTTGCAGTG 	1
---------------------------------------------------------------ACCGGGTGAACACTTGCAGT 	5
----------------------------------------------------------------CCGGGTGAACACTTGCAGT 	4


Overlaps with: MNEST038271
Overlaps with miRBase pre-miRNAs: cel-mir-37
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM297752-9446 TCACCGGGTGAACACTTGCAGT TGTGGGTGTCCGTTGCGGTGCTA down 5 1


Secondary structure

ATTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCTCTG
--------AACCCTTGGACCAGTGTGGGTG 	1
----------------------TGTGGGTGTCCGTTGCGGTGCTA 	14
----------------------TGTGGGTGTCCGTTGCGGTGC 	1
-------------------------------------------------------------TCACCGGGTGAACACTTGCAG 	32
-------------------------------------------------------------TCACCGGGTGAACACTTGC 	6
-------------------------------------------------------------TCACCGGGTGAACACTTGCA 	8
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGT 	1036
--------------------------------------------------------------CACCGGGTGAACACTTGCAGT 	2
---------------------------------------------------------------ACCGGGTGAACACTTGCAGT 	2
----------------------------------------------------------------CCGGGTGAACACTTGCAGT 	7


Overlaps with: MNEST038271
Overlaps with miRBase pre-miRNAs: cel-mir-37
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Caenorhabditis elegans GSM427301-5681 TCACCGGGTGAACACTTGCAGT TGTGGGTGTCCGTTGCGGTGCTA down 5 1


Secondary structure

ATTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCTCTG
----------------------TGTGGGTGTCCGTTGCGGTGC 	1
------------------------------------------------------------ATCACCGGGTGAACACTTGCAGT 	22
------------------------------------------------------------ATCACCGGGTGAACACTTGCAG 	5
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTG 	28
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGT 	77320
-------------------------------------------------------------TCACCGGGTGAACACTTGCAG 	1432
-------------------------------------------------------------TCACCGGGTGAACACTTGCA 	129
-------------------------------------------------------------TCACCGGGTGAACACTTGC 	8
-------------------------------------------------------------TCACCGGGTGAACACTTGCAGTGG 	3
--------------------------------------------------------------CACCGGGTGAACACTTGCAGT 	50
--------------------------------------------------------------CACCGGGTGAACACTTGCAG 	3
---------------------------------------------------------------ACCGGGTGAACACTTGCAGT 	447
---------------------------------------------------------------ACCGGGTGAACACTTGCAG 	10
---------------------------------------------------------------ACCGGGTGAACACTTGCAGTG 	1
----------------------------------------------------------------CCGGGTGAACACTTGCAGT 	4


Overlaps with: MNEST038271
Overlaps with miRBase pre-miRNAs: cel-mir-37
HuntMi prediction: true miRNA