miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCACCGGGTGGAAACTAGCAGT

selected species: Caenorhabditis elegans

9 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Caenorhabditis elegans	GSM427344-5691	TCACCGGGTGGAAACTAGCAGT	TGCTGGTTTCTTCCACAGTGGTA	down	3	1

Secondary structure

TTCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAGAACTATCACCGGGTGGAAACTAGCAGTGGCTCGATCTTTTCCACTT
-----------------------GCTGGTTTCTTCCACAGTGGTA 	1
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAGT 	5
------------------------------------------------------------ATCACCGGGTGGAAACTAGCA 	1
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAG 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG 	190
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT 	267838
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAG 	18195
-------------------------------------------------------------TCACCGGGTGGAAACTAGCA 	3420
-------------------------------------------------------------TCACCGGGTGGAAACTAGC 	105
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTGG 	4
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTGGCT 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTGGC 	1
--------------------------------------------------------------CACCGGGTGGAAACTAGCAGT 	56
--------------------------------------------------------------CACCGGGTGGAAACTAGCAG 	6
--------------------------------------------------------------CACCGGGTGGAAACTAGCA 	2
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGT 	2008
---------------------------------------------------------------ACCGGGTGGAAACTAGCAG 	139
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGTG 	3
----------------------------------------------------------------CCGGGTGGAAACTAGCAGT 	3
----------------------------------------------------------------CCGGGTGGAAACTAGCAGTGGCT 	1

Overlaps with: MNEST038269
Overlaps with miRBase pre-miRNAs: cel-mir-35
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Caenorhabditis elegans	GSM427332-5684	TCACCGGGTGGAAACTAGCAGT	TGCTGGTTTCTTCCACAGTGGTA	down	3	1

Secondary structure

TTCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAGAACTATCACCGGGTGGAAACTAGCAGTGGCTCGATCTTTTCCACTT
----------------------TGCTGGTTTCTTCCACAGTGGTA 	3
----------------------TGCTGGTTTCTTCCACAGT 	1
-----------------------------------------------------------TATCACCGGGTGGAAACTAGCA 	1
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAGT 	9
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAG 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG 	93
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT 	143763
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAG 	9027
-------------------------------------------------------------TCACCGGGTGGAAACTAGCA 	1560
-------------------------------------------------------------TCACCGGGTGGAAACTAGC 	178
--------------------------------------------------------------CACCGGGTGGAAACTAGCAGT 	593
--------------------------------------------------------------CACCGGGTGGAAACTAGCAG 	62
--------------------------------------------------------------CACCGGGTGGAAACTAGCA 	4
--------------------------------------------------------------CACCGGGTGGAAACTAGCAGTG 	1
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGT 	824
---------------------------------------------------------------ACCGGGTGGAAACTAGCAG 	60
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGTG 	1
----------------------------------------------------------------CCGGGTGGAAACTAGCAGT 	18
----------------------------------------------------------------CCGGGTGGAAACTAGCAGTGGCT 	1
----------------------------------------------------------------CCGGGTGGAAACTAGCAGTGG 	1

Overlaps with: MNEST038269
Overlaps with miRBase pre-miRNAs: cel-mir-35
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Caenorhabditis elegans	GSM378784	TCACCGGGTGGAAACTAGCAGT	TGCTGGTTTCTTCCACAGTGGTA	down	3	1

Secondary structure

TTCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAGAACTATCACCGGGTGGAAACTAGCAGTGGCTCGATCTTTTCCACTT
---------------------TTGCTGGTTTCTTCCACAGTGGT 	1
---------------------------------------------------------ACTATCACCGGGTGGAAACTAGCAGT 	2
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT 	1168
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAG 	102
-------------------------------------------------------------TCACCGGGTGGAAACTAGC 	24

Overlaps with: MNEST038269
Overlaps with miRBase pre-miRNAs: cel-mir-35
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Caenorhabditis elegans	GSM427346-5695	TCACCGGGTGGAAACTAGCAGT	TGCTGGTTTCTTCCACAGTGGTA	down	3	1

Secondary structure

TTCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAGAACTATCACCGGGTGGAAACTAGCAGTGGCTCGATCTTTTCCACTT
----------------------TGCTGGTTTCTTCCACAGTGGTA 	11
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAGT 	2
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG 	32
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT 	52678
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAG 	3914
-------------------------------------------------------------TCACCGGGTGGAAACTAGCA 	683
-------------------------------------------------------------TCACCGGGTGGAAACTAGC 	81
--------------------------------------------------------------CACCGGGTGGAAACTAGCAGT 	14
--------------------------------------------------------------CACCGGGTGGAAACTAGCAG 	3
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGT 	392
---------------------------------------------------------------ACCGGGTGGAAACTAGCAG 	35
------------------------------------------------------------------------AAACTAGCAGTGGCTCGATCTTT 	1

Overlaps with: MNEST038269
Overlaps with miRBase pre-miRNAs: cel-mir-35
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Caenorhabditis elegans	GSM427345-5693	TCACCGGGTGGAAACTAGCAGT	TGCTGGTTTCTTCCACAGTGGTA	down	3	1

Secondary structure

TTCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAGAACTATCACCGGGTGGAAACTAGCAGTGGCTCGATCTTTTCCACTT
----------------------TGCTGGTTTCTTCCACAGTGGTA 	1
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAGT 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG 	33
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT 	40181
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAG 	3775
-------------------------------------------------------------TCACCGGGTGGAAACTAGCA 	793
-------------------------------------------------------------TCACCGGGTGGAAACTAGC 	73
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTGG 	1
--------------------------------------------------------------CACCGGGTGGAAACTAGCAGT 	23
--------------------------------------------------------------CACCGGGTGGAAACTAGCAG 	2
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGT 	290
---------------------------------------------------------------ACCGGGTGGAAACTAGCAG 	18
----------------------------------------------------------------CCGGGTGGAAACTAGCAGT 	7

Overlaps with: MNEST038269
Overlaps with miRBase pre-miRNAs: cel-mir-35
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Caenorhabditis elegans	GSM427297-5679	TCACCGGGTGGAAACTAGCAGT	TGCTGGTTTCTTCCACAGTGGTA	down	3	1

Secondary structure

TTCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAGAACTATCACCGGGTGGAAACTAGCAGTGGCTCGATCTTTTCCACTT
----------------------TGCTGGTTTCTTCCACAGTGGTA 	1
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAGT 	2
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAG 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG 	74
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT 	82406
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAG 	8027
-------------------------------------------------------------TCACCGGGTGGAAACTAGCA 	1958
-------------------------------------------------------------TCACCGGGTGGAAACTAGC 	41
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTGGC 	2
--------------------------------------------------------------CACCGGGTGGAAACTAGCAGT 	26
--------------------------------------------------------------CACCGGGTGGAAACTAGCAG 	1
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGT 	593
---------------------------------------------------------------ACCGGGTGGAAACTAGCAG 	43
----------------------------------------------------------------CCGGGTGGAAACTAGCAGT 	5

Overlaps with: MNEST038269
Overlaps with miRBase pre-miRNAs: cel-mir-35
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Caenorhabditis elegans	GSM297751-9445	TCACCGGGTGGAAACTAGCAGT	TGCTGGTTTCTTCCACAGTGGTA	down	3	1

Secondary structure

TTCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAGAACTATCACCGGGTGGAAACTAGCAGTGGCTCGATCTTTTCCACTT
----------------------TGCTGGTTTCTTCCACAGTGGT 	15
----------------------TGCTGGTTTCTTCCACAGTGGTA 	136
-----------------------GCTGGTTTCTTCCACAGTGGTA 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCA 	59
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT 	1429
-------------------------------------------------------------TCACCGGGTGGAAACTAGC 	6
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAG 	70
--------------------------------------------------------------CACCGGGTGGAAACTAGCAGT 	2
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGT 	4
----------------------------------------------------------------CCGGGTGGAAACTAGCAGT 	3

Overlaps with: MNEST038269
Overlaps with miRBase pre-miRNAs: cel-mir-35
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Caenorhabditis elegans	GSM297752-9446	TCACCGGGTGGAAACTAGCAGT	TGCTGGTTTCTTCCACAGTGGTA	down	3	1

Secondary structure

TTCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAGAACTATCACCGGGTGGAAACTAGCAGTGGCTCGATCTTTTCCACTT
----------------------TGCTGGTTTCTTCCACAGTGG 	1
----------------------TGCTGGTTTCTTCCACAGTGGTA 	150
----------------------TGCTGGTTTCTTCCACAGTGGT 	4
-----------------------GCTGGTTTCTTCCACAGTGGTA 	1
------------------------CTGGTTTCTTCCACAGTGGTA 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCA 	52
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT 	718
-------------------------------------------------------------TCACCGGGTGGAAACTAGC 	9
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAG 	39
--------------------------------------------------------------CACCGGGTGGAAACTAGCAGT 	1
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGT 	2
----------------------------------------------------------------CCGGGTGGAAACTAGCAGT 	6

Overlaps with: MNEST038269
Overlaps with miRBase pre-miRNAs: cel-mir-35
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Caenorhabditis elegans	GSM427301-5681	TCACCGGGTGGAAACTAGCAGT	TGCTGGTTTCTTCCACAGTGGTA	down	3	1

Secondary structure

TTCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAGAACTATCACCGGGTGGAAACTAGCAGTGGCTCGATCTTTTCCACTT
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAGT 	2
------------------------------------------------------------ATCACCGGGTGGAAACTAGCAG 	1
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG 	132
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT 	91846
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAG 	7927
-------------------------------------------------------------TCACCGGGTGGAAACTAGCA 	2032
-------------------------------------------------------------TCACCGGGTGGAAACTAGC 	32
-------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTGG 	3
--------------------------------------------------------------CACCGGGTGGAAACTAGCAGT 	20
--------------------------------------------------------------CACCGGGTGGAAACTAGCAG 	1
--------------------------------------------------------------CACCGGGTGGAAACTAGCA 	1
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGT 	558
---------------------------------------------------------------ACCGGGTGGAAACTAGCAG 	48
---------------------------------------------------------------ACCGGGTGGAAACTAGCAGTG 	2
----------------------------------------------------------------CCGGGTGGAAACTAGCAGT 	6

Overlaps with: MNEST038269
Overlaps with miRBase pre-miRNAs: cel-mir-35
HuntMi prediction: true miRNA