miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCACCGGGTGTAAATCAGCTTG

selected species: Caenorhabditis elegans

9 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Caenorhabditis elegans	GSM427344-5691	TCACCGGGTGTAAATCAGCTTG	AGCTGATTTCGTCTTGGTAATA	down	2	2

Secondary structure

ATTCCTGATATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTCTCCGAACC
---------------------CAGCTGATTTCGTCTTGGTAATA 	5
----------------------AGCTGATTTCGTCTTGGTAATA 	887
----------------------AGCTGATTTCGTCTTGGTAAT 	46
----------------------AGCTGATTTCGTCTTGGTAA 	17
----------------------AGCTGATTTCGTCTTGGTA 	8
----------------------AGCTGATTTCGTCTTGGTAATAA 	4
-----------------------GCTGATTTCGTCTTGGTAATA 	2
-----------------------GCTGATTTCGTCTTGGTAAT 	1
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG 	1607
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTT 	78
--------------------------------------------------------------TCACCGGGTGTAAATCAGCT 	25
--------------------------------------------------------------TCACCGGGTGTAAATCAGC 	16
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG 	4
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGGC 	1
----------------------------------------------------------------ACCGGGTGTAAATCAGCTTG 	13
----------------------------------------------------------------ACCGGGTGTAAATCAGCTT 	2

Overlaps with: MNEST038273
Overlaps with miRBase pre-miRNAs: cel-mir-39
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Caenorhabditis elegans	GSM427332-5684	TCACCGGGTGTAAATCAGCTTG	AGCTGATTTCGTCTTGGTAATA	down	2	2

Secondary structure

ATTCCTGATATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTCTCCGAACC
---------------------CAGCTGATTTCGTCTTGGTAATA 	7
----------------------AGCTGATTTCGTCTTGGTAATA 	1380
----------------------AGCTGATTTCGTCTTGGTAAT 	52
----------------------AGCTGATTTCGTCTTGGTAA 	42
----------------------AGCTGATTTCGTCTTGGTAATAAGC 	14
----------------------AGCTGATTTCGTCTTGGTAATAA 	6
----------------------AGCTGATTTCGTCTTGGTA 	7
----------------------AGCTGATTTCGTCTTGGTAATAAG 	1
-----------------------GCTGATTTCGTCTTGGTAATA 	2
-----------------------GCTGATTTCGTCTTGGTAATAA 	2
-----------------------GCTGATTTCGTCTTGGTAAT 	1
-------------------------TGATTTCGTCTTGGTAATA 	2
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG 	1635
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTT 	138
--------------------------------------------------------------TCACCGGGTGTAAATCAGCT 	31
--------------------------------------------------------------TCACCGGGTGTAAATCAGC 	16
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG 	1
---------------------------------------------------------------CACCGGGTGTAAATCAGCTTG 	15
---------------------------------------------------------------CACCGGGTGTAAATCAGCTT 	1
----------------------------------------------------------------ACCGGGTGTAAATCAGCTTG 	13
-----------------------------------------------------------------CCGGGTGTAAATCAGCTTG 	1

Overlaps with: MNEST038273
Overlaps with miRBase pre-miRNAs: cel-mir-39
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Caenorhabditis elegans	GSM378784	TCACCGGGTGTAAATCAGCTTG	AGCTGATTTCGTCTTGGTAATA	down	2	2

Secondary structure

ATTCCTGATATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTCTCCGAACC
----------------------AGCTGATTTCGTCTTGGTAAT 	10
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG 	22
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG 	2807
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTT 	23
--------------------------------------------------------------TCACCGGGTGTAAATCAGCT 	2
---------------------------------------------------------------CACCGGGTGTAAATCAGCTTG 	2
-----------------------------------------------------------------CCGGGTGTAAATCAGCTTG 	1

Overlaps with: MNEST038273
Overlaps with miRBase pre-miRNAs: cel-mir-39
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Caenorhabditis elegans	GSM427346-5695	TCACCGGGTGTAAATCAGCTTG	AGCTGATTTCGTCTTGGTAATA	down	2	2

Secondary structure

ATTCCTGATATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTCTCCGAACC
---------------------CAGCTGATTTCGTCTTGGTAATA 	1
---------------------CAGCTGATTTCGTCTTGGTAAT 	1
----------------------AGCTGATTTCGTCTTGGTAATA 	313
----------------------AGCTGATTTCGTCTTGGTAAT 	10
----------------------AGCTGATTTCGTCTTGGTAA 	12
----------------------AGCTGATTTCGTCTTGGTA 	2
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG 	4
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG 	1599
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTT 	81
--------------------------------------------------------------TCACCGGGTGTAAATCAGCT 	23
--------------------------------------------------------------TCACCGGGTGTAAATCAGC 	25
---------------------------------------------------------------CACCGGGTGTAAATCAGCTTG 	1
----------------------------------------------------------------ACCGGGTGTAAATCAGCTTG 	21
-----------------------------------------------------------------CCGGGTGTAAATCAGCTTG 	1

Overlaps with: MNEST038273
Overlaps with miRBase pre-miRNAs: cel-mir-39
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Caenorhabditis elegans	GSM427345-5693	TCACCGGGTGTAAATCAGCTTG	AGCTGATTTCGTCTTGGTAATA	down	2	2

Secondary structure

ATTCCTGATATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTCTCCGAACC
----------------------AGCTGATTTCGTCTTGGTAATA 	112
----------------------AGCTGATTTCGTCTTGGTAAT 	8
----------------------AGCTGATTTCGTCTTGGTAATAAGC 	3
----------------------AGCTGATTTCGTCTTGGTAA 	1
----------------------AGCTGATTTCGTCTTGGTA 	1
-----------------------GCTGATTTCGTCTTGGTAATAA 	1
-------------------------TGATTTCGTCTTGGTAATAAGC 	1
-------------------------------------------------------------ATCACCGGGTGTAAATCAGCTTG 	1
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG 	1071
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTT 	37
--------------------------------------------------------------TCACCGGGTGTAAATCAGCT 	11
--------------------------------------------------------------TCACCGGGTGTAAATCAGC 	24
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG 	3
---------------------------------------------------------------CACCGGGTGTAAATCAGCTTG 	1
----------------------------------------------------------------ACCGGGTGTAAATCAGCTTG 	13
----------------------------------------------------------------ACCGGGTGTAAATCAGCTT 	2

Overlaps with: MNEST038273
Overlaps with miRBase pre-miRNAs: cel-mir-39
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Caenorhabditis elegans	GSM427297-5679	TCACCGGGTGTAAATCAGCTTG	AGCTGATTTCGTCTTGGTAATA	down	2	2

Secondary structure

ATTCCTGATATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTCTCCGAACC
----------------------AGCTGATTTCGTCTTGGTAATA 	85
----------------------AGCTGATTTCGTCTTGGTAAT 	3
----------------------AGCTGATTTCGTCTTGGTAA 	1
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG 	649
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTT 	8
--------------------------------------------------------------TCACCGGGTGTAAATCAGC 	6
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG 	2
--------------------------------------------------------------TCACCGGGTGTAAATCAGCT 	2
---------------------------------------------------------------CACCGGGTGTAAATCAGCTTG 	1
----------------------------------------------------------------ACCGGGTGTAAATCAGCTTG 	7
-----------------------------------------------------------------CCGGGTGTAAATCAGCTTG 	1

Overlaps with: MNEST038273
Overlaps with miRBase pre-miRNAs: cel-mir-39
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Caenorhabditis elegans	GSM297751-9445	TCACCGGGTGTAAATCAGCTTG	AGCTGATTTCGTCTTGGTAATA	down	2	2

Secondary structure

ATTCCTGATATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTCTCCGAACC
----------------------AGCTGATTTCGTCTTGGTAATA 	24
----------------------AGCTGATTTCGTCTTGGTAAT 	1
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG 	3095
--------------------------------------------------------------TCACCGGGTGTAAATCAGC 	7
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTT 	9
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG 	11
--------------------------------------------------------------TCACCGGGTGTAAATCAGCT 	5
---------------------------------------------------------------CACCGGGTGTAAATCAGCTTG 	2
----------------------------------------------------------------ACCGGGTGTAAATCAGCTTG 	10
-----------------------------------------------------------------CCGGGTGTAAATCAGCTTG 	26
------------------------------------------------------------------CGGGTGTAAATCAGCTTGG 	1

Overlaps with: MNEST038273
Overlaps with miRBase pre-miRNAs: cel-mir-39
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Caenorhabditis elegans	GSM297752-9446	TCACCGGGTGTAAATCAGCTTG	AGCTGATTTCGTCTTGGTAATA	down	2	2

Secondary structure

ATTCCTGATATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTCTCCGAACC
---------------------CAGCTGATTTCGTCTTGGTAA 	1
----------------------AGCTGATTTCGTCTTGGTAATA 	19
----------------------AGCTGATTTCGTCTTGGTAAT 	5
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG 	2398
--------------------------------------------------------------TCACCGGGTGTAAATCAGC 	13
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTT 	4
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG 	8
---------------------------------------------------------------CACCGGGTGTAAATCAGCTTG 	1
----------------------------------------------------------------ACCGGGTGTAAATCAGCTTG 	1
-----------------------------------------------------------------CCGGGTGTAAATCAGCTTG 	21

Overlaps with: MNEST038273
Overlaps with miRBase pre-miRNAs: cel-mir-39
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Caenorhabditis elegans	GSM427301-5681	TCACCGGGTGTAAATCAGCTTG	AGCTGATTTCGTCTTGGTAATA	down	2	2

Secondary structure

ATTCCTGATATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTCTCCGAACC
---------------------CAGCTGATTTCGTCTTGGTAATA 	1
----------------------AGCTGATTTCGTCTTGGTAATA 	19
----------------------AGCTGATTTCGTCTTGGTAAT 	3
----------------------AGCTGATTTCGTCTTGGTAA 	1
-------------------------------------------------------------ATCACCGGGTGTAAATCAGCTTG 	1
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG 	609
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTT 	11
--------------------------------------------------------------TCACCGGGTGTAAATCAGCT 	7
--------------------------------------------------------------TCACCGGGTGTAAATCAGC 	8
--------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG 	3
----------------------------------------------------------------ACCGGGTGTAAATCAGCTTG 	8

Overlaps with: MNEST038273
Overlaps with miRBase pre-miRNAs: cel-mir-39
HuntMi prediction: true miRNA