miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCACCGGGTGTACATCAGCTAA

selected species: Caenorhabditis elegans

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Caenorhabditis elegans	GSM427344-5691	TCACCGGGTGTACATCAGCTAA	AGTGGATGTATGCCATGATGATA	down	3	1

Secondary structure

TCCGAACCTCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGTGCATT
-----------------------AGTGGATGTATGCCATGATGATA 	13
-----------------------AGTGGATGTATGCCATGATGAT 	1
------------------------GTGGATGTATGCCATGATGATA 	1
------------------------GTGGATGTATGCCATGATGATAAGA 	1
-----------------------------------------------------------CCTATCACCGGGTGTACATCAGCT 	1
------------------------------------------------------------CTATCACCGGGTGTACATCAGC 	6
------------------------------------------------------------CTATCACCGGGTGTACATCAG 	1
--------------------------------------------------------------ATCACCGGGTGTACATCAGCTAA 	3
--------------------------------------------------------------ATCACCGGGTGTACATCAGCTA 	2
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAAG 	20
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAA 	19460
---------------------------------------------------------------TCACCGGGTGTACATCAGCTA 	953
---------------------------------------------------------------TCACCGGGTGTACATCAGCT 	100
---------------------------------------------------------------TCACCGGGTGTACATCAGC 	80
----------------------------------------------------------------CACCGGGTGTACATCAGCTAA 	28
----------------------------------------------------------------CACCGGGTGTACATCAGCTA 	3
----------------------------------------------------------------CACCGGGTGTACATCAGCTAAG 	1
-----------------------------------------------------------------ACCGGGTGTACATCAGCTAA 	145
-----------------------------------------------------------------ACCGGGTGTACATCAGCTA 	7

Overlaps with: MNEST038274
Overlaps with miRBase pre-miRNAs: cel-mir-40
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Caenorhabditis elegans	GSM427332-5684	TCACCGGGTGTACATCAGCTAA	AGTGGATGTATGCCATGATGATA	down	3	1

Secondary structure

TCCGAACCTCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGTGCATT
-----------------------AGTGGATGTATGCCATGATGATA 	15
------------------------GTGGATGTATGCCATGATGATA 	1
-----------------------------------------------------------CCTATCACCGGGTGTACATCAGC 	1
------------------------------------------------------------CTATCACCGGGTGTACATCAGC 	27
------------------------------------------------------------CTATCACCGGGTGTACATCAG 	2
------------------------------------------------------------CTATCACCGGGTGTACATCAGCT 	1
-------------------------------------------------------------TATCACCGGGTGTACATCAGCTAA 	4
-------------------------------------------------------------TATCACCGGGTGTACATCAGC 	1
--------------------------------------------------------------ATCACCGGGTGTACATCAGCTAA 	12
--------------------------------------------------------------ATCACCGGGTGTACATCAGCTA 	18
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAAG 	44
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAA 	55151
---------------------------------------------------------------TCACCGGGTGTACATCAGCTA 	2666
---------------------------------------------------------------TCACCGGGTGTACATCAGCT 	240
---------------------------------------------------------------TCACCGGGTGTACATCAGC 	162
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAAGGT 	1
----------------------------------------------------------------CACCGGGTGTACATCAGCTAA 	395
----------------------------------------------------------------CACCGGGTGTACATCAGCTA 	17
----------------------------------------------------------------CACCGGGTGTACATCAGCTAAG 	4
----------------------------------------------------------------CACCGGGTGTACATCAGCT 	3
-----------------------------------------------------------------ACCGGGTGTACATCAGCTAA 	391
-----------------------------------------------------------------ACCGGGTGTACATCAGCTA 	15
------------------------------------------------------------------CCGGGTGTACATCAGCTAA 	12

Overlaps with: MNEST038274
Overlaps with miRBase pre-miRNAs: cel-mir-40
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Caenorhabditis elegans	GSM427346-5695	TCACCGGGTGTACATCAGCTAA	AGTGGATGTATGCCATGATGATA	down	3	1

Secondary structure

TCCGAACCTCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGTGCATT
-----------------------AGTGGATGTATGCCATGATGATA 	6
------------------------------------------------------------CTATCACCGGGTGTACATCAGC 	7
------------------------------------------------------------CTATCACCGGGTGTACATCAGCT 	3
--------------------------------------------------------------ATCACCGGGTGTACATCAGCTAA 	3
--------------------------------------------------------------ATCACCGGGTGTACATCAG 	1
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAAG 	15
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAA 	14508
---------------------------------------------------------------TCACCGGGTGTACATCAGCTA 	954
---------------------------------------------------------------TCACCGGGTGTACATCAGCT 	138
---------------------------------------------------------------TCACCGGGTGTACATCAGC 	60
----------------------------------------------------------------CACCGGGTGTACATCAGCTAA 	21
----------------------------------------------------------------CACCGGGTGTACATCAGCTA 	3
-----------------------------------------------------------------ACCGGGTGTACATCAGCTAA 	139
-----------------------------------------------------------------ACCGGGTGTACATCAGCTA 	9

Overlaps with: MNEST038274
Overlaps with miRBase pre-miRNAs: cel-mir-40
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Caenorhabditis elegans	GSM427345-5693	TCACCGGGTGTACATCAGCTAA	AGTGGATGTATGCCATGATGATA	down	3	1

Secondary structure

TCCGAACCTCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGTGCATT
-----------------------AGTGGATGTATGCCATGATGATAA 	1
-----------------------AGTGGATGTATGCCATGATGATA 	1
------------------------------------------------------------CTATCACCGGGTGTACATCAGC 	2
------------------------------------------------------------CTATCACCGGGTGTACATCAG 	1
--------------------------------------------------------------ATCACCGGGTGTACATCAGCTA 	3
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAA 	9820
---------------------------------------------------------------TCACCGGGTGTACATCAGCTA 	395
---------------------------------------------------------------TCACCGGGTGTACATCAGCT 	58
---------------------------------------------------------------TCACCGGGTGTACATCAGC 	94
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAAG 	6
----------------------------------------------------------------CACCGGGTGTACATCAGCTAA 	8
----------------------------------------------------------------CACCGGGTGTACATCAGCTAAG 	1
-----------------------------------------------------------------ACCGGGTGTACATCAGCTAA 	76
-----------------------------------------------------------------ACCGGGTGTACATCAGCTA 	2
------------------------------------------------------------------CCGGGTGTACATCAGCTAA 	3

Overlaps with: MNEST038274
Overlaps with miRBase pre-miRNAs: cel-mir-40
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Caenorhabditis elegans	GSM427297-5679	TCACCGGGTGTACATCAGCTAA	AGTGGATGTATGCCATGATGATA	down	3	1

Secondary structure

TCCGAACCTCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGTGCATT
-----------------------AGTGGATGTATGCCATGATGATA 	2
------------------------------------------------------------CTATCACCGGGTGTACATCAGC 	1
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAA 	7996
---------------------------------------------------------------TCACCGGGTGTACATCAGCTA 	148
---------------------------------------------------------------TCACCGGGTGTACATCAGCT 	16
---------------------------------------------------------------TCACCGGGTGTACATCAGC 	18
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAAG 	3
----------------------------------------------------------------CACCGGGTGTACATCAGCTAA 	9
-----------------------------------------------------------------ACCGGGTGTACATCAGCTAA 	51
-----------------------------------------------------------------ACCGGGTGTACATCAGCTA 	1
------------------------------------------------------------------CCGGGTGTACATCAGCTAA 	1

Overlaps with: MNEST038274
Overlaps with miRBase pre-miRNAs: cel-mir-40
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Caenorhabditis elegans	GSM297751-9445	TCACCGGGTGTACATCAGCTAA	AGTGGATGTATGCCATGATGATA	down	3	1

Secondary structure

TCCGAACCTCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGTGCATT
-----------------------AGTGGATGTATGCCATGATGAT 	12
-----------------------AGTGGATGTATGCCATGATGATA 	204
-----------------------AGTGGATGTATGCCATGATG 	2
-----------------------AGTGGATGTATGCCATGATGATAA 	1
-----------------------AGTGGATGTATGCCATGATGA 	3
------------------------GTGGATGTATGCCATGATGATA 	4
---------------------------------------------------------------TCACCGGGTGTACATCAGCT 	3
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAA 	1530
---------------------------------------------------------------TCACCGGGTGTACATCAGCTA 	15
---------------------------------------------------------------TCACCGGGTGTACATCAGC 	4
----------------------------------------------------------------CACCGGGTGTACATCAGCTA 	1
-----------------------------------------------------------------ACCGGGTGTACATCAGCTAA 	1
------------------------------------------------------------------CCGGGTGTACATCAGCTAA 	6

Overlaps with: MNEST038274
Overlaps with miRBase pre-miRNAs: cel-mir-40
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Caenorhabditis elegans	GSM297752-9446	TCACCGGGTGTACATCAGCTAA	AGTGGATGTATGCCATGATGATA	down	3	1

Secondary structure

TCCGAACCTCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGTGCATT
-----------------------AGTGGATGTATGCCATGATGATA 	84
-----------------------AGTGGATGTATGCCATGATGAT 	5
-----------------------AGTGGATGTATGCCATGATGA 	2
------------------------GTGGATGTATGCCATGATGATA 	1
-------------------------TGGATGTATGCCATGATGATA 	1
--------------------------GGATGTATGCCATGATGATAAGA 	1
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAAG 	1
---------------------------------------------------------------TCACCGGGTGTACATCAGCT 	1
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAA 	984
---------------------------------------------------------------TCACCGGGTGTACATCAGCTA 	13
---------------------------------------------------------------TCACCGGGTGTACATCAGC 	4
-----------------------------------------------------------------ACCGGGTGTACATCAGCTAA 	9
------------------------------------------------------------------CCGGGTGTACATCAGCTAA 	13

Overlaps with: MNEST038274
Overlaps with miRBase pre-miRNAs: cel-mir-40
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Caenorhabditis elegans	GSM427301-5681	TCACCGGGTGTACATCAGCTAA	AGTGGATGTATGCCATGATGATA	down	3	1

Secondary structure

TCCGAACCTCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGTGCATT
--------------------------------------------------------------ATCACCGGGTGTACATCAGCTA 	1
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAA 	5689
---------------------------------------------------------------TCACCGGGTGTACATCAGCTA 	84
---------------------------------------------------------------TCACCGGGTGTACATCAGCT 	7
---------------------------------------------------------------TCACCGGGTGTACATCAGC 	18
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAAG 	3
---------------------------------------------------------------TCACCGGGTGTACATCAGCTAAGGT 	1
----------------------------------------------------------------CACCGGGTGTACATCAGCTAA 	4
-----------------------------------------------------------------ACCGGGTGTACATCAGCTAA 	34
-----------------------------------------------------------------ACCGGGTGTACATCAGCTA 	1

Overlaps with: MNEST038274
Overlaps with miRBase pre-miRNAs: cel-mir-40
HuntMi prediction: true miRNA