miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCACTCCTCTTCTTCTTGATG

selected species: Arabidopsis thaliana



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM366866 TCACTCCTCTTCTTCTTGATG TCTTGATGAAGAGGAATGGGA down 4 0


Secondary structure

TCTTAAGTTAAGAAGAGAATAAGATTCTTACATCTTGATGAAGAGGAATGGGAAGCCGAAATCTAAACTGAAACAGAGGCGTCACCCAATTATCAATTGGTAAGTGATATCTATGTTTCGATCTGTATCTCGGCCTTTCACTCCTCTTCTTCTTGATGTAAGAATTTGTTATTCGACACATTAGATG
--------------------------------TCTTGATGAAGAGGAATGGGAAGC 	1
--------------------------------TCTTGATGAAGAGGAATGGGA 	66
--------------------------------TCTTGATGAAGAGGAATGGGAA 	11
--------------------------------------TGAAGAGGAATGGGAAGCCGA 	2
--------------------------------------------------------------------------------------------------------------------------------------CTTTCACTCCTCTTCTTCTTGATG 	5
-----------------------------------------------------------------------------------------------------------------------------------------TCACTCCTCTTCTTCTTGATG 	417
-----------------------------------------------------------------------------------------------------------------------------------------TCACTCCTCTTCTTCTTGAT 	2
-----------------------------------------------------------------------------------------------------------------------------------------TCACTCCTCTTCTTCTTGATGT 	6
-----------------------------------------------------------------------------------------------------------------------------------------TCACTCCTCTTCTTCTTGA 	1
------------------------------------------------------------------------------------------------------------------------------------------CACTCCTCTTCTTCTTGATGT 	1
-------------------------------------------------------------------------------------------------------------------------------------------ACTCCTCTTCTTCTTGATG 	11
-------------------------------------------------------------------------------------------------------------------------------------------ACTCCTCTTCTTCTTGATGTA 	28

Overlaps with: MNEST040172 MNEST047078
Overlaps with miRBase pre-miRNAs: ath-MIR847
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM518432-13544 TCACTCCTCTTCTTCTTGATG TCTTGATGAAGAGGAATGGGA down 4 0


Secondary structure

TCTTAAGTTAAGAAGAGAATAAGATTCTTACATCTTGATGAAGAGGAATGGGAAGCCGAAATCTAAACTGAAACAGAGGCGTCACCCAATTATCAATTGGTAAGTGATATCTATGTTTCGATCTGTATCTCGGCCTTTCACTCCTCTTCTTCTTGATGTAAGAATTTGTTATTCGACACATTAGATG
-------------------------------ATCTTGATGAAGAGGAATGGG 	1
--------------------------------TCTTGATGAAGAGGAATGGGA 	4
--------------------------------TCTTGATGAAGAGGAATGGG 	1
--------------------------------------------------------------------------------------------------------------------------------------CTTTCACTCCTCTTCTTCTTGATG 	1
-----------------------------------------------------------------------------------------------------------------------------------------TCACTCCTCTTCTTCTTGAT 	1
-----------------------------------------------------------------------------------------------------------------------------------------TCACTCCTCTTCTTCTTGATG 	30
-------------------------------------------------------------------------------------------------------------------------------------------ACTCCTCTTCTTCTTGATGTA 	4

Overlaps with: MNEST040172 MNEST047078
Overlaps with miRBase pre-miRNAs: ath-MIR847
HuntMi prediction: true miRNA