miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCACTGGGCAAAGTGTGTCTCA

selected species: Drosophila melanogaster

18 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM360257-14325	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	2
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	1
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	7

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399107-16288	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	3
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	2
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	8

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM399106-16287	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	1
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	2
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	9

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM466487_wt_total	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	2
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	4
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	19

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM360262-14327	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
------------GGATGCATCTTGTGCAGTTATG 	2
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	5
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	19

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360256-14324	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	3
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	2
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	8
-------------------------------------------------ACTGGGCAAAGTGTGTCTCA 	1

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM466494_r2d2_heterozygotes_untreated	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	1
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	1
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	7

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM466496_r2d2_homozygotes_untreated	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	5
-----------------------------------------------TCACTGGGCAAAGTGTGTC 	1
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	13

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM371638-15389	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
------------GGATGCATCTTGTGCAGTTATG 	1
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	2
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	7

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM286605-9793	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
----------TGGGATGCATCTTGTGCAGTTA 	1
-----------GGGATGCATCTTGTGCAGTTA 	3
-----------GGGATGCATCTTGTGCAGTTATG 	25
-----------GGGATGCATCTTGTGCAGTTAT 	2
------------GGATGCATCTTGTGCAGTTAT 	78
------------GGATGCATCTTGTGCAGTTA 	7
------------GGATGCATCTTGTGCAGTTATG 	1417
---------------TGCATCTTGTGCAGTTATG 	3
---------------TGCATCTTGTGCAGTTATGTTT 	10
--------------------------------------------ACATCACTGGGCAAAGTGTGTC 	3
---------------------------------------------CATCACTGGGCAAAGTGTGTCT 	3
----------------------------------------------ATCACTGGGCAAAGTGTGTCTCA 	50
----------------------------------------------ATCACTGGGCAAAGTGTGTCTCAA 	3
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	1060
-----------------------------------------------TCACTGGGCAAAGTGTGTC 	14
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCAA 	705
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	197
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	24857
------------------------------------------------CACTGGGCAAAGTGTGTCTC 	5
------------------------------------------------CACTGGGCAAAGTGTGTCTCA 	79
------------------------------------------------CACTGGGCAAAGTGTGTCTCAA 	74
-------------------------------------------------ACTGGGCAAAGTGTGTCTC 	2
-------------------------------------------------ACTGGGCAAAGTGTGTCTCAA 	21
-------------------------------------------------ACTGGGCAAAGTGTGTCTCAAG 	38
-------------------------------------------------ACTGGGCAAAGTGTGTCTCA 	28
--------------------------------------------------CTGGGCAAAGTGTGTCTCA 	3

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM343833-15151	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	1
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	5

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM360260-14326	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
------------GGATGCATCTTGTGCAGTTAT 	1
------------GGATGCATCTTGTGCAGTTATG 	2
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	1
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	22

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Drosophila melanogaster	GSM322543-14323	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
------------GGATGCATCTTGTGCAGTTATG 	50
---------------TGCATCTTGTGCAGTTATGTTT 	7
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCAA 	11
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	11
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	434
------------------------------------------------CACTGGGCAAAGTGTGTCTCA 	1

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Drosophila melanogaster	GSM286607-9796	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
----------TGGGATGCATCTTGTGCAGTTA 	4
------------GGATGCATCTTGTGCAGTTAT 	3
------------GGATGCATCTTGTGCAGTTATG 	4
---------------TGCATCTTGTGCAGTTATGTTT 	12
---------------------------------------------CATCACTGGGCAAAGTGTGTCT 	3
----------------------------------------------ATCACTGGGCAAAGTGTGTCTC 	10
----------------------------------------------ATCACTGGGCAAAGTGTGTCTCA 	4
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCAA 	152
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	779
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	463
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	6053
-----------------------------------------------TCACTGGGCAAAGTGTGTC 	11
------------------------------------------------CACTGGGCAAAGTGTGTCTCAA 	1
------------------------------------------------CACTGGGCAAAGTGTGTCT 	2
------------------------------------------------CACTGGGCAAAGTGTGTCTC 	4
------------------------------------------------CACTGGGCAAAGTGTGTCTCA 	56
-------------------------------------------------ACTGGGCAAAGTGTGTCTC 	3
-------------------------------------------------ACTGGGCAAAGTGTGTCTCAA 	17
-------------------------------------------------ACTGGGCAAAGTGTGTCTCA 	6
-------------------------------------------------ACTGGGCAAAGTGTGTCTCAAG 	7
--------------------------------------------------CTGGGCAAAGTGTGTCTCAAGA 	9

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Drosophila melanogaster	GSM399101-5265	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	1
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	6

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Drosophila melanogaster	GSM286604-9792	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
------------GGATGCATCTTGTGCAGTTAT 	1
------------GGATGCATCTTGTGCAGTTA 	7
------------GGATGCATCTTGTGCAGTTATG 	159
-------------GATGCATCTTGTGCAGTTATG 	4
----------------------------------------------ATCACTGGGCAAAGTGTGTCTCA 	4
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCAA 	80
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	223
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	79
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	2894
-----------------------------------------------TCACTGGGCAAAGTGTGTC 	8
------------------------------------------------CACTGGGCAAAGTGTGTCTCAA 	2
------------------------------------------------CACTGGGCAAAGTGTGTCTCA 	2
-------------------------------------------------ACTGGGCAAAGTGTGTCTCAAG 	3

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Drosophila melanogaster	GSM399110-16285	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------GGGATGCATCTTGTGCAGTTATG 	2
------------GGATGCATCTTGTGCAGTTAT 	6
------------GGATGCATCTTGTGCAGTTA 	6
------------GGATGCATCTTGTGCAGTTATG 	187
----------------------------------------------ATCACTGGGCAAAGTGTGTCTCA 	6
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCAA 	23
-----------------------------------------------TCACTGGGCAAAGTGTGTCTC 	34
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	8
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	1351
------------------------------------------------CACTGGGCAAAGTGTGTCTCAA 	1
-------------------------------------------------ACTGGGCAAAGTGTGTCTCA 	4

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Drosophila melanogaster	GSM466492_dcr-2_homozygotes_untreated	TCACTGGGCAAAGTGTGTCTCA	GGATGCATCTTGTGCAGTTATG	down	3	0

Secondary structure

GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGG
-----------------------------------------------TCACTGGGCAAAGTGTGTCTCA 	12
-----------------------------------------------TCACTGGGCAAAGTGTGTCT 	1

Overlaps with: MNEST036331 MNEST036332 MNEST037118
Overlaps with miRBase pre-miRNAs: dme-mir-3 dse-mir-3
HuntMi prediction: true miRNA