miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCACTGGGCTTTGTTTATCTCA

selected species: Drosophila melanogaster



15 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------GGATACACACAGTTCAGTTTTG 	1
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	65
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	1
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	11
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCTCA 	1


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399106-16287 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
-----------------------------------------GGGATACACACAGTTCAGTTTTG 	1
------------------------------------------GGATACACACAGTTCAGTTTTG 	117
------------------------------------------GGATACACACAGTTCAGTTTT 	2
----------------------------------------------------------------------------CATCACTGGGCTTTGTTTATCTCA 	1
----------------------------------------------------------------------------CATCACTGGGCTTTGTTTATC 	2
-----------------------------------------------------------------------------ATCACTGGGCTTTGTTTATCTCA 	21
-----------------------------------------------------------------------------ATCACTGGGCTTTGTTTATCTC 	4
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCAT 	21
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	19962
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATC 	35
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	535
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	2452
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCTCAT 	1
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCTCA 	33
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCTC 	5
--------------------------------------------------------------------------------ACTGGGCTTTGTTTATCTC 	1
--------------------------------------------------------------------------------ACTGGGCTTTGTTTATCTCA 	7
---------------------------------------------------------------------------------CTGGGCTTTGTTTATCTCA 	3


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466487_wt_total TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCAT 	1
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	78
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	9
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCTCA 	2
--------------------------------------------------------------------------------ACTGGGCTTTGTTTATCTCA 	1


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399105-16286 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	23
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	2


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM360262-14327 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	5
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	2


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM385822-16273 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCAT 	2
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	136
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATC 	7
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	37
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	73
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCTCA 	1
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCT 	1
--------------------------------------------------------------------------------ACTGGGCTTTGTTTATCTC 	1
--------------------------------------------------------------------------------ACTGGGCTTTGTTTATCTCA 	3


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM466494_r2d2_heterozygotes_untreated TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	8
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	2
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	1


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	13
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	4
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	4


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM371638-15389 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCAT 	2
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATC 	12
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	450
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	153
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	172
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCTCA 	1
--------------------------------------------------------------------------------ACTGGGCTTTGTTTATCTCA 	8


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM399100-5263 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	31
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	7
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	13


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM286607-9796 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	5


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM399101-5265 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	43
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	5
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	9


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM286604-9792 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	24
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	1
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	6


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Drosophila melanogaster GSM385744-16261 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
-----------------------------------------------------------------------------ATCACTGGGCTTTGTTTATCTC 	1
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	152
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATC 	7
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	43
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	79
--------------------------------------------------------------------------------ACTGGGCTTTGTTTATCTCA 	3


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Drosophila melanogaster GSM385748-16264 TCACTGGGCTTTGTTTATCTCA GGATACACACAGTTCAGTTTTG down 4 0


Secondary structure

GCGTGAATCCTGGATGAAAAGGTCCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTTCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGAAACCTTAAATCATA
----------------------------------------------------------------------------CATCACTGGGCTTTGTTTATCT 	1
-----------------------------------------------------------------------------ATCACTGGGCTTTGTTTATCTC 	1
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCA 	332
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTCAT 	1
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATC 	13
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCT 	97
------------------------------------------------------------------------------TCACTGGGCTTTGTTTATCTC 	176
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCTC 	1
-------------------------------------------------------------------------------CACTGGGCTTTGTTTATCTCA 	1
--------------------------------------------------------------------------------ACTGGGCTTTGTTTATCTC 	1
--------------------------------------------------------------------------------ACTGGGCTTTGTTTATCTCA 	7
---------------------------------------------------------------------------------CTGGGCTTTGTTTATCTCA 	1


Overlaps with: MNEST036229 MNEST036473 MNEST036474 MNEST037185
Overlaps with miRBase pre-miRNAs: der-mir-318 dme-mir-318 dse-mir-318
HuntMi prediction: true miRNA