miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCACTGGTCTTTCTCTGACGAA

selected species: Caenorhabditis elegans



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM297751-9445 TCACTGGTCTTTCTCTGACGAA GTTAGAGTAACACACAGTTACA down 4 1


Secondary structure

TTTTCTACAGTACTGATATTAATGCTCCTTGAAATTTCAATCGTTAGAGTAACACACAGTTACACGACCTCATCAATCGTGTCACTGGTCTTTCTCTGACGAATTGAAGTTCTGGAGACAATTTTGGTTGTTGAAAAGGCTG
---------------------------------------------------------------------------------TCACTGGTCTTTCTCTGAC 	1
---------------------------------------------------------------------------------TCACTGGTCTTTCTCTGACGAAT 	13
---------------------------------------------------------------------------------TCACTGGTCTTTCTCTGACGAA 	63

Overlaps with: MNEST038384
Overlaps with miRBase pre-miRNAs: cel-mir-359
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM297752-9446 TCACTGGTCTTTCTCTGACGAA GTTAGAGTAACACACAGTTACA down 4 1


Secondary structure

TTTTCTACAGTACTGATATTAATGCTCCTTGAAATTTCAATCGTTAGAGTAACACACAGTTACACGACCTCATCAATCGTGTCACTGGTCTTTCTCTGACGAATTGAAGTTCTGGAGACAATTTTGGTTGTTGAAAAGGCTG
---------------------------------------------------------------------------------TCACTGGTCTTTCTCTGACGAAT 	13
---------------------------------------------------------------------------------TCACTGGTCTTTCTCTGACGAA 	49
------------------------------------------------------------------------------------CTGGTCTTTCTCTGACGAA 	1

Overlaps with: MNEST038384
Overlaps with miRBase pre-miRNAs: cel-mir-359
HuntMi prediction: true miRNA