miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCAGGTACTAGGTGACTCTGA

selected species: Bombyx mori



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean TCAGGTACTAGGTGACTCTGA AGAGCCGCCTCGTGCCTCAGC up 3 0


Secondary structure

AGACGGAGGCGGGCGGCCGCCTCAGGTACTAGGTGACTCTGAGTGGTGCCGGTCTCAGAGCCGCCTCGTGCCTCAGCGCGGGCTCCGCCGACACG
---------------------TCAGGTACTAGGTGACTCTGAGT 	11
---------------------TCAGGTACTAGGTGACTCTGAG 	347
---------------------TCAGGTACTAGGTGACTCTGA 	1513
---------------------TCAGGTACTAGGTGACTCTG 	77
---------------------TCAGGTACTAGGTGACTCT 	31
----------------------CAGGTACTAGGTGACTCTGA 	3
-----------------------AGGTACTAGGTGACTCTGA 	2
-----------------------AGGTACTAGGTGACTCTGAG 	1
--------------------------------------------------------AGAGCCGCCTCGTGCCTCAGCG 	1


Overlaps with: MNEST035563
Overlaps with miRBase pre-miRNAs: bmo-mir-306b bmo-mir-306a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean TCAGGTACTAGGTGACTCTGA AGAGCCGCCTCGTGCCTCAGC up 3 0


Secondary structure

AGACGGAGGCGGGCGGCCGCCTCAGGTACTAGGTGACTCTGAGTGGTGCCGGTCTCAGAGCCGCCTCGTGCCTCAGCGCGGGCTCCGCCGACACG
------------------GCCTCAGGTACTAGGTGACT 	1
--------------------CTCAGGTACTAGGTGACTCTGA 	315
--------------------CTCAGGTACTAGGTGACTCTGAG 	16
--------------------CTCAGGTACTAGGTGACTCTG 	15
--------------------CTCAGGTACTAGGTGACTC 	2
--------------------CTCAGGTACTAGGTGACTCT 	1
---------------------TCAGGTACTAGGTGACTCTGAG 	9034
---------------------TCAGGTACTAGGTGACTCTGA 	167450
---------------------TCAGGTACTAGGTGACTCTG 	5760
---------------------TCAGGTACTAGGTGACTCT 	1361
---------------------TCAGGTACTAGGTGACTCTGAGT 	30
---------------------TCAGGTACTAGGTGACTCTGAGTG 	1
----------------------CAGGTACTAGGTGACTCTGA 	645
----------------------CAGGTACTAGGTGACTCTGAG 	30
----------------------CAGGTACTAGGTGACTCTG 	23
-----------------------AGGTACTAGGTGACTCTGAG 	176
-----------------------AGGTACTAGGTGACTCTGA 	2818
-----------------------AGGTACTAGGTGACTCTGAGT 	2
--------------------------TACTAGGTGACTCTGAGTGGTG 	1
------------------------------------------------------TCAGAGCCGCCTCGTGCCTCAG 	1
------------------------------------------------------TCAGAGCCGCCTCGTGCCTCA 	1
-------------------------------------------------------CAGAGCCGCCTCGTGCCTCAGCG 	30
-------------------------------------------------------CAGAGCCGCCTCGTGCCTCAGC 	34
-------------------------------------------------------CAGAGCCGCCTCGTGCCTCAG 	50
-------------------------------------------------------CAGAGCCGCCTCGTGCCTCA 	50
-------------------------------------------------------CAGAGCCGCCTCGTGCCTC 	4
--------------------------------------------------------AGAGCCGCCTCGTGCCTCAGCG 	94
--------------------------------------------------------AGAGCCGCCTCGTGCCTCAGC 	14
--------------------------------------------------------AGAGCCGCCTCGTGCCTCAG 	6
--------------------------------------------------------AGAGCCGCCTCGTGCCTCA 	4


Overlaps with: MNEST035563
Overlaps with miRBase pre-miRNAs: bmo-mir-306b bmo-mir-306a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Bombyx mori GSM449727_Posterior_silkgland_clean TCAGGTACTAGGTGACTCTGA AGAGCCGCCTCGTGCCTCAGC up 3 0


Secondary structure

AGACGGAGGCGGGCGGCCGCCTCAGGTACTAGGTGACTCTGAGTGGTGCCGGTCTCAGAGCCGCCTCGTGCCTCAGCGCGGGCTCCGCCGACACG
--------------------CTCAGGTACTAGGTGACTCTGA 	39
--------------------CTCAGGTACTAGGTGACTCTG 	5
--------------------CTCAGGTACTAGGTGACTCTGAG 	3
---------------------TCAGGTACTAGGTGACTCTGAG 	1817
---------------------TCAGGTACTAGGTGACTCTGA 	47942
---------------------TCAGGTACTAGGTGACTCTG 	1765
---------------------TCAGGTACTAGGTGACTCT 	319
---------------------TCAGGTACTAGGTGACTCTGAGT 	5
----------------------CAGGTACTAGGTGACTCTGA 	205
----------------------CAGGTACTAGGTGACTCTGAG 	8
----------------------CAGGTACTAGGTGACTCTG 	10
----------------------CAGGTACTAGGTGACTCTGAGT 	1
-----------------------AGGTACTAGGTGACTCTGA 	600
-----------------------AGGTACTAGGTGACTCTGAG 	19
--------------------------TACTAGGTGACTCTGAGTGGTGC 	1
--------------------------TACTAGGTGACTCTGAGTGGTG 	1
-------------------------------------------------------CAGAGCCGCCTCGTGCCTCAG 	30
-------------------------------------------------------CAGAGCCGCCTCGTGCCTCA 	29
-------------------------------------------------------CAGAGCCGCCTCGTGCCTCAGCG 	4
-------------------------------------------------------CAGAGCCGCCTCGTGCCTCAGC 	3
--------------------------------------------------------AGAGCCGCCTCGTGCCTCAG 	14
--------------------------------------------------------AGAGCCGCCTCGTGCCTCAGCG 	12
--------------------------------------------------------AGAGCCGCCTCGTGCCTCAGC 	9
--------------------------------------------------------AGAGCCGCCTCGTGCCTCA 	6


Overlaps with: MNEST035563
Overlaps with miRBase pre-miRNAs: bmo-mir-306b bmo-mir-306a
HuntMi prediction: true miRNA