miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCAGTCTTGTCGAATGGTG

selected species: Bombyx mori



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean TCAGTCTTGTCGAATGGTG CCCTTCGTCTTGACTGGCG down 5 0


Secondary structure

ATTACTCGTCCGCCCTTCGTCTTGACTGGCGCTGTCGCTTGCATCAGTCTTGTCGAATGGTGGGTGAGTTT
---------CCGCCCTTCGTCTTGACTGGCG 	8
---------CCGCCCTTCGTCTTGACTGG 	16
---------CCGCCCTTCGTCTTGACTG 	3
---------CCGCCCTTCGTCTTGACTGGC 	1
------------------------------------------ATCAGTCTTGTCGAATGGT 	9
------------------------------------------ATCAGTCTTGTCGAATGGTGGGT 	4
------------------------------------------ATCAGTCTTGTCGAATGGTGG 	6
------------------------------------------ATCAGTCTTGTCGAATGGTG 	1
-------------------------------------------TCAGTCTTGTCGAATGGTGGGT 	275
-------------------------------------------TCAGTCTTGTCGAATGGTGGG 	25
-------------------------------------------TCAGTCTTGTCGAATGGTGG 	74
-------------------------------------------TCAGTCTTGTCGAATGGTG 	2124
--------------------------------------------CAGTCTTGTCGAATGGTGGGT 	2
---------------------------------------------AGTCTTGTCGAATGGTGGGT 	1


Overlaps with: MNEST035630
Overlaps with miRBase pre-miRNAs: bmo-mir-2766
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean TCAGTCTTGTCGAATGGTG CCCTTCGTCTTGACTGGCG down 5 0


Secondary structure

ATTACTCGTCCGCCCTTCGTCTTGACTGGCGCTGTCGCTTGCATCAGTCTTGTCGAATGGTGGGTGAGTTT
---------CCGCCCTTCGTCTTGACTGGCG 	158
---------CCGCCCTTCGTCTTGACTG 	16
---------CCGCCCTTCGTCTTGACTGG 	8
---------CCGCCCTTCGTCTTGACTGGC 	3
---------CCGCCCTTCGTCTTGACTGGCGC 	1
----------CGCCCTTCGTCTTGACTGGCG 	5
-----------------------------------------CATCAGTCTTGTCGAATGGT 	1
------------------------------------------ATCAGTCTTGTCGAATGGTGG 	96
------------------------------------------ATCAGTCTTGTCGAATGGTG 	37
------------------------------------------ATCAGTCTTGTCGAATGGT 	37
------------------------------------------ATCAGTCTTGTCGAATGGTGGGT 	13
------------------------------------------ATCAGTCTTGTCGAATGGTGGG 	2
-------------------------------------------TCAGTCTTGTCGAATGGTGGGT 	3560
-------------------------------------------TCAGTCTTGTCGAATGGTGGG 	616
-------------------------------------------TCAGTCTTGTCGAATGGTGG 	9907
-------------------------------------------TCAGTCTTGTCGAATGGTG 	32943
-------------------------------------------TCAGTCTTGTCGAATGGTGGGTG 	2
--------------------------------------------CAGTCTTGTCGAATGGTGGGT 	3
--------------------------------------------CAGTCTTGTCGAATGGTGGG 	2
--------------------------------------------CAGTCTTGTCGAATGGTGG 	1
---------------------------------------------AGTCTTGTCGAATGGTGGGT 	90
---------------------------------------------AGTCTTGTCGAATGGTGGG 	17


Overlaps with: MNEST035630
Overlaps with miRBase pre-miRNAs: bmo-mir-2766
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Bombyx mori GSM449727_Posterior_silkgland_clean TCAGTCTTGTCGAATGGTG CCCTTCGTCTTGACTGGCG down 5 0


Secondary structure

ATTACTCGTCCGCCCTTCGTCTTGACTGGCGCTGTCGCTTGCATCAGTCTTGTCGAATGGTGGGTGAGTTT
---------CCGCCCTTCGTCTTGACTGGCG 	26
---------CCGCCCTTCGTCTTGACTG 	4
---------CCGCCCTTCGTCTTGACTGG 	3
---------CCGCCCTTCGTCTTGACTGGC 	2
------------CCCTTCGTCTTGACTGGCG 	1
-----------------------------------------CATCAGTCTTGTCGAATGGT 	1
-----------------------------------------CATCAGTCTTGTCGAATGGTG 	1
------------------------------------------ATCAGTCTTGTCGAATGGTGG 	22
------------------------------------------ATCAGTCTTGTCGAATGGT 	12
------------------------------------------ATCAGTCTTGTCGAATGGTG 	6
------------------------------------------ATCAGTCTTGTCGAATGGTGGG 	2
-------------------------------------------TCAGTCTTGTCGAATGGTGGGT 	446
-------------------------------------------TCAGTCTTGTCGAATGGTGGG 	95
-------------------------------------------TCAGTCTTGTCGAATGGTGG 	1617
-------------------------------------------TCAGTCTTGTCGAATGGTG 	7746
--------------------------------------------CAGTCTTGTCGAATGGTGG 	1
---------------------------------------------AGTCTTGTCGAATGGTGGGT 	12


Overlaps with: MNEST035630
Overlaps with miRBase pre-miRNAs: bmo-mir-2766
HuntMi prediction: true miRNA