miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCAGTGCAATCCCTTTGGAAT

selected species: Oryza sativa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM520638-18676 TCAGTGCAATCCCTTTGGAAT TCCAAAGGGATCGCATTGATC down 2 0


Secondary structure

CCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCT
-----------------AGGACTCCAAAGGGATCGCATTGA 	38
-----------------AGGACTCCAAAGGGATCGC 	1
-----------------AGGACTCCAAAGGGATCGCATTGAT 	2
--------------------ACTCCAAAGGGATCGCATTGA 	1
---------------------CTCCAAAGGGATCGCATTGAT 	57
---------------------CTCCAAAGGGATCGCATTGATC 	5
---------------------CTCCAAAGGGATCGCATTGA 	4
---------------------CTCCAAAGGGATCGCATTGATCTG 	1
----------------------TCCAAAGGGATCGCATTGATCT 	1
----------------------TCCAAAGGGATCGCATTGA 	16
----------------------TCCAAAGGGATCGCATTGATC 	673
----------------------TCCAAAGGGATCGCATTGAT 	43
-----------------------CCAAAGGGATCGCATTGATC 	4
------------------------CAAAGGGATCGCATTGATC 	9
-----------------------------------------------------------------------------------------CGTGATCGATCAGTGCAAT 	1
-------------------------------------------------------------------------------------------------ATCAGTGCAATCCCTTTGGAAT 	4
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAA 	18
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGA 	38
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAAT 	1188
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAATT 	5
---------------------------------------------------------------------------------------------------CAGTGCAATCCCTTTGGAATT 	3
---------------------------------------------------------------------------------------------------CAGTGCAATCCCTTTGGAAT 	4
----------------------------------------------------------------------------------------------------AGTGCAATCCCTTTGGAAT 	12
----------------------------------------------------------------------------------------------------AGTGCAATCCCTTTGGAATTTTCC 	1
----------------------------------------------------------------------------------------------------AGTGCAATCCCTTTGGAATT 	2
------------------------------------------------------------------------------------------------------TGCAATCCCTTTGGAATTTTCC 	1


Overlaps with: MNEST004351
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM520640-18679 TCAGTGCAATCCCTTTGGAAT TCCAAAGGGATCGCATTGATC down 2 0


Secondary structure

CCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCT
------------AGTGGAGGACTCCAAAGGGAT 	2
--------------TGGAGGACTCCAAAGGGATCG 	1
-----------------AGGACTCCAAAGGGATCGCATTGAT 	1
-----------------AGGACTCCAAAGGGATCGCA 	1
-----------------AGGACTCCAAAGGGATCGCATTGA 	62
-----------------AGGACTCCAAAGGGATCGC 	1
-----------------AGGACTCCAAAGGGATCGCATT 	1
-----------------AGGACTCCAAAGGGATCGCAT 	1
------------------GGACTCCAAAGGGATCGCATTGA 	2
-------------------GACTCCAAAGGGATCGCATTGA 	1
--------------------ACTCCAAAGGGATCGCATTGA 	1
--------------------ACTCCAAAGGGATCGCATTGATC 	1
---------------------CTCCAAAGGGATCGCATTGAT 	99
---------------------CTCCAAAGGGATCGCATTGATC 	8
---------------------CTCCAAAGGGATCGCATTGA 	1
----------------------TCCAAAGGGATCGCATTGATCT 	1
----------------------TCCAAAGGGATCGCATTGA 	24
----------------------TCCAAAGGGATCGCATTGATC 	1562
----------------------TCCAAAGGGATCGCATTGAT 	40
-----------------------CCAAAGGGATCGCATTGATC 	4
------------------------CAAAGGGATCGCATTGATC 	13
-------------------------------------------------------------------------------------------------ATCAGTGCAATCCCTTTGGAA 	1
-------------------------------------------------------------------------------------------------ATCAGTGCAATCCCTTTGGAAT 	9
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAATTT 	1
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAA 	24
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGA 	66
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAAT 	1650
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAATT 	2
---------------------------------------------------------------------------------------------------CAGTGCAATCCCTTTGGAA 	1
---------------------------------------------------------------------------------------------------CAGTGCAATCCCTTTGGAATT 	4
---------------------------------------------------------------------------------------------------CAGTGCAATCCCTTTGGAAT 	4
----------------------------------------------------------------------------------------------------AGTGCAATCCCTTTGGAAT 	16
----------------------------------------------------------------------------------------------------AGTGCAATCCCTTTGGAATTTTCC 	2


Overlaps with: MNEST004351
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520634-18667 TCAGTGCAATCCCTTTGGAAT TCCAAAGGGATCGCATTGATC down 2 0


Secondary structure

CCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCT
-------AAACTAGTGGAGGACTCCAAAGGGA 	1
------------AGTGGAGGACTCCAAAGGGATCGC 	1
----------------------TCCAAAGGGATCGCATTGATC 	11
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAAT 	25


Overlaps with: MNEST004351
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM520637-18674 TCAGTGCAATCCCTTTGGAAT TCCAAAGGGATCGCATTGATC down 2 0


Secondary structure

CCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCT
-----------------AGGACTCCAAAGGGATCGCA 	1
-----------------AGGACTCCAAAGGGATCGCATTGA 	10
---------------------CTCCAAAGGGATCGCATTGAT 	37
---------------------CTCCAAAGGGATCGCATTGATC 	4
---------------------CTCCAAAGGGATCGCATTGA 	4
----------------------TCCAAAGGGATCGCATTGATCT 	2
----------------------TCCAAAGGGATCGCATTGA 	38
----------------------TCCAAAGGGATCGCATTGATC 	487
----------------------TCCAAAGGGATCGCATTGAT 	25
-----------------------CCAAAGGGATCGCATTGATC 	2
------------------------CAAAGGGATCGCATTGATC 	4
-------------------------------------------------------------------------------------------------ATCAGTGCAATCCCTTTGGAAT 	1
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAA 	17
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGA 	54
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAAT 	730
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAATT 	2
---------------------------------------------------------------------------------------------------CAGTGCAATCCCTTTGGAATT 	2
---------------------------------------------------------------------------------------------------CAGTGCAATCCCTTTGGAAT 	1
----------------------------------------------------------------------------------------------------AGTGCAATCCCTTTGGAAT 	5


Overlaps with: MNEST004351
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520639-18678 TCAGTGCAATCCCTTTGGAAT TCCAAAGGGATCGCATTGATC down 2 0


Secondary structure

CCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCT
------------AGTGGAGGACTCCAAAGGGAT 	4
--------------TGGAGGACTCCAAAGGGATCG 	4
-----------------AGGACTCCAAAGGGATCGCATTGAT 	2
-----------------AGGACTCCAAAGGGATCGCATTGA 	65
-----------------AGGACTCCAAAGGGATCGCATTG 	2
-----------------AGGACTCCAAAGGGATCGC 	3
-----------------AGGACTCCAAAGGGATCGCATT 	1
------------------GGACTCCAAAGGGATCGCATTG 	2
--------------------ACTCCAAAGGGATCGCATTGA 	3
--------------------ACTCCAAAGGGATCGCATTGAT 	3
---------------------CTCCAAAGGGATCGCATTGAT 	42
----------------------TCCAAAGGGATCGCATTGAT 	23
----------------------TCCAAAGGGATCGCATTGATC 	442
----------------------TCCAAAGGGATCGCATTGA 	3
------------------------CAAAGGGATCGCATTGATC 	5
-----------------------------------------------------------------------------------------------CGATCAGTGCAATCCCTTTGGA 	1
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGA 	66
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAAT 	567
--------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAA 	11
---------------------------------------------------------------------------------------------------CAGTGCAATCCCTTTGGAAT 	4
----------------------------------------------------------------------------------------------------AGTGCAATCCCTTTGGAATT 	1
----------------------------------------------------------------------------------------------------AGTGCAATCCCTTTGGAAT 	1


Overlaps with: MNEST004351
HuntMi prediction: true miRNA