miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCAGTGCATCACAGAACTTTGT

selected species: Sus scrofa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TCAGTGCATCACAGAACTTTGT GAAGTTCTGTTATACACTCAGGCT down 2 2


Secondary structure

AGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGC
-----------TGAAGTTCTGTTATACACTCAGGC 	1
------------GAAGTTCTGTTATACACTCAGGCT 	7
------------GAAGTTCTGTTATACACTCAGG 	27
------------GAAGTTCTGTTATACACTCAG 	4
------------GAAGTTCTGTTATACACTCAGGC 	163
---------------------------------------------------TCAGTGCATCACAGAACTTT 	46
---------------------------------------------------TCAGTGCATCACAGAACTTTG 	106
---------------------------------------------------TCAGTGCATCACAGAACTTTGTC 	6
---------------------------------------------------TCAGTGCATCACAGAACTTTGT 	3063
---------------------------------------------------TCAGTGCATCACAGAACTT 	6
----------------------------------------------------CAGTGCATCACAGAACTTTGT 	10
-----------------------------------------------------AGTGCATCACAGAACTTTGT 	15


Overlaps with: MNEST027051 MNEST027052
Overlaps with miRBase pre-miRNAs: ggo-mir-148b hsa-mir-148b cfa-mir-148b ptr-mir-148b eca-mir-148b mml-mir-148b ppy-mir-148b bta-mir-148b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TCAGTGCATCACAGAACTTTGT GAAGTTCTGTTATACACTCAGGCT down 2 2


Secondary structure

AGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGC
-----------TGAAGTTCTGTTATACACTCAGG 	1
-----------TGAAGTTCTGTTATACACTCAGGC 	1
------------GAAGTTCTGTTATACACTCAGGCT 	10
------------GAAGTTCTGTTATACACTCAGGC 	169
------------GAAGTTCTGTTATACACTCAGG 	32
------------GAAGTTCTGTTATACACTCAG 	5
-------------AAGTTCTGTTATACACTCAGGCT 	1
-------------AAGTTCTGTTATACACTCAGGC 	2
---------------------------------------------------TCAGTGCATCACAGAACTTTGTCT 	3
---------------------------------------------------TCAGTGCATCACAGAACTTTG 	115
---------------------------------------------------TCAGTGCATCACAGAACTTT 	46
---------------------------------------------------TCAGTGCATCACAGAACTTTGT 	3897
---------------------------------------------------TCAGTGCATCACAGAACTT 	5
---------------------------------------------------TCAGTGCATCACAGAACTTTGTC 	8
----------------------------------------------------CAGTGCATCACAGAACTTTG 	1
----------------------------------------------------CAGTGCATCACAGAACTTTGT 	2
-----------------------------------------------------AGTGCATCACAGAACTTTGT 	8


Overlaps with: MNEST027051 MNEST027052
Overlaps with miRBase pre-miRNAs: ggo-mir-148b hsa-mir-148b cfa-mir-148b ptr-mir-148b eca-mir-148b mml-mir-148b ppy-mir-148b bta-mir-148b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 TCAGTGCATCACAGAACTTTGT GAAGTTCTGTTATACACTCAGGCT down 2 2


Secondary structure

AGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGC
------------GAAGTTCTGTTATACACTCAGGCT 	5
------------GAAGTTCTGTTATACACTCAGG 	7
------------GAAGTTCTGTTATACACTCAG 	3
------------GAAGTTCTGTTATACACTCAGGC 	86
-------------AAGTTCTGTTATACACTCAGGC 	1
---------------------------------------------------TCAGTGCATCACAGAACTTTGT 	3638
---------------------------------------------------TCAGTGCATCACAGAACTT 	4
---------------------------------------------------TCAGTGCATCACAGAACTTTGTC 	5
---------------------------------------------------TCAGTGCATCACAGAACTTTG 	70
---------------------------------------------------TCAGTGCATCACAGAACTTT 	50
----------------------------------------------------CAGTGCATCACAGAACTTTGT 	9
-----------------------------------------------------AGTGCATCACAGAACTTTGT 	14


Overlaps with: MNEST027051 MNEST027052
Overlaps with miRBase pre-miRNAs: ggo-mir-148b hsa-mir-148b cfa-mir-148b ptr-mir-148b eca-mir-148b mml-mir-148b ppy-mir-148b bta-mir-148b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TCAGTGCATCACAGAACTTTGT GAAGTTCTGTTATACACTCAGGCT down 2 2


Secondary structure

AGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGC
----------GTGAAGTTCTGTTATACACTCAGGC 	2
-----------TGAAGTTCTGTTATACACTCAGG 	4
-----------TGAAGTTCTGTTATACACTCAGGC 	9
-----------TGAAGTTCTGTTATACACTCAGGCT 	2
-----------TGAAGTTCTGTTATACACTCAG 	1
------------GAAGTTCTGTTATACACTCAGGCT 	81
------------GAAGTTCTGTTATACACTCAGGC 	734
------------GAAGTTCTGTTATACACTCAG 	12
------------GAAGTTCTGTTATACACTCAGG 	94
-------------AAGTTCTGTTATACACTCAGGC 	7
-------------AAGTTCTGTTATACACTCAGG 	5
-------------AAGTTCTGTTATACACTCAGGCT 	10
----------------TTCTGTTATACACTCAGGCT 	1
---------------------------------------------------TCAGTGCATCACAGAACTTTGTCT 	12
---------------------------------------------------TCAGTGCATCACAGAACTTT 	173
---------------------------------------------------TCAGTGCATCACAGAACTT 	28
---------------------------------------------------TCAGTGCATCACAGAACTTTGTC 	37
---------------------------------------------------TCAGTGCATCACAGAACTTTG 	401
---------------------------------------------------TCAGTGCATCACAGAACTTTGT 	17109
----------------------------------------------------CAGTGCATCACAGAACTTT 	2
----------------------------------------------------CAGTGCATCACAGAACTTTGT 	73
----------------------------------------------------CAGTGCATCACAGAACTTTG 	4
-----------------------------------------------------AGTGCATCACAGAACTTTGT 	70
-----------------------------------------------------AGTGCATCACAGAACTTTG 	5
------------------------------------------------------GTGCATCACAGAACTTTGT 	1


Overlaps with: MNEST027051 MNEST027052
Overlaps with miRBase pre-miRNAs: ggo-mir-148b hsa-mir-148b cfa-mir-148b ptr-mir-148b eca-mir-148b mml-mir-148b ppy-mir-148b bta-mir-148b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TCAGTGCATCACAGAACTTTGT GAAGTTCTGTTATACACTCAGGCT down 2 2


Secondary structure

AGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGC
------------GAAGTTCTGTTATACACTCAGGCT 	16
------------GAAGTTCTGTTATACACTCAGG 	3
------------GAAGTTCTGTTATACACTCAG 	1
------------GAAGTTCTGTTATACACTCAGGC 	83
-------------AAGTTCTGTTATACACTCAGGC 	1
-------------AAGTTCTGTTATACACTCAGGCT 	1
--------------AGTTCTGTTATACACTCAGGC 	1
---------------------------------------------------TCAGTGCATCACAGAACTTTGTCT 	4
---------------------------------------------------TCAGTGCATCACAGAACTTTGT 	3469
---------------------------------------------------TCAGTGCATCACAGAACTT 	4
---------------------------------------------------TCAGTGCATCACAGAACTTTGTC 	11
---------------------------------------------------TCAGTGCATCACAGAACTTTG 	47
---------------------------------------------------TCAGTGCATCACAGAACTTT 	27
----------------------------------------------------CAGTGCATCACAGAACTTTGT 	12
-----------------------------------------------------AGTGCATCACAGAACTTTGT 	12


Overlaps with: MNEST027051 MNEST027052
Overlaps with miRBase pre-miRNAs: ggo-mir-148b hsa-mir-148b cfa-mir-148b ptr-mir-148b eca-mir-148b mml-mir-148b ppy-mir-148b bta-mir-148b
HuntMi prediction: true miRNA