miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCAGTGCATGACAGAACTTGG

selected species: Sus scrofa

5 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Sus scrofa	GSM636844	TCAGTGCATGACAGAACTTGG	AGGTTCTGTGATACACTCCGACT	down	2	2

Secondary structure

TCCTCCCGGCCCAGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGGGCCCGGACG
-------------------------------------------------GTCAGTGCATGACAGAACTTGG 	41
--------------------------------------------------TCAGTGCATGACAGAACTTGGG 	134
--------------------------------------------------TCAGTGCATGACAGAACTTG 	314
--------------------------------------------------TCAGTGCATGACAGAACTT 	112
--------------------------------------------------TCAGTGCATGACAGAACTTGG 	17353
---------------------------------------------------CAGTGCATGACAGAACTTGG 	33
----------------------------------------------------AGTGCATGACAGAACTTGGG 	1
----------------------------------------------------AGTGCATGACAGAACTTGG 	77

Overlaps with: MNEST033239
Overlaps with miRBase pre-miRNAs: bta-mir-152 bta-mir-2957 cfa-mir-152
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Sus scrofa	GSM636847	TCAGTGCATGACAGAACTTGG	AGGTTCTGTGATACACTCCGACT	down	2	2

Secondary structure

TCCTCCCGGCCCAGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGGGCCCGGACG
-------------------------------------------------GTCAGTGCATGACAGAACTTGG 	36
--------------------------------------------------TCAGTGCATGACAGAACTTGGGC 	1
--------------------------------------------------TCAGTGCATGACAGAACTTGGG 	98
--------------------------------------------------TCAGTGCATGACAGAACTTG 	225
--------------------------------------------------TCAGTGCATGACAGAACTT 	89
--------------------------------------------------TCAGTGCATGACAGAACTTGG 	15678
---------------------------------------------------CAGTGCATGACAGAACTTGG 	15
----------------------------------------------------AGTGCATGACAGAACTTGGG 	1
----------------------------------------------------AGTGCATGACAGAACTTGG 	43

Overlaps with: MNEST033239
Overlaps with miRBase pre-miRNAs: bta-mir-152 bta-mir-2957 cfa-mir-152
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Sus scrofa	GSM636849	TCAGTGCATGACAGAACTTGG	AGGTTCTGTGATACACTCCGACT	down	2	2

Secondary structure

TCCTCCCGGCCCAGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGGGCCCGGACG
-------------------------------------------------GTCAGTGCATGACAGAACTTGG 	13
-------------------------------------------------GTCAGTGCATGACAGAACTTG 	1
--------------------------------------------------TCAGTGCATGACAGAACTTGGGC 	1
--------------------------------------------------TCAGTGCATGACAGAACTTGGG 	19
--------------------------------------------------TCAGTGCATGACAGAACTTGG 	2583
--------------------------------------------------TCAGTGCATGACAGAACTTG 	23
--------------------------------------------------TCAGTGCATGACAGAACTT 	9
---------------------------------------------------CAGTGCATGACAGAACTTGG 	5
----------------------------------------------------AGTGCATGACAGAACTTGG 	21

Overlaps with: MNEST033239
Overlaps with miRBase pre-miRNAs: bta-mir-152 bta-mir-2957 cfa-mir-152
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Sus scrofa	GSM636848	TCAGTGCATGACAGAACTTGG	AGGTTCTGTGATACACTCCGACT	down	2	2

Secondary structure

TCCTCCCGGCCCAGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGGGCCCGGACG
------------AGGTTCTGTGATACACTCCGA 	1
-----------------------------------------------CAGTCAGTGCATGACAGAACTTG 	1
-------------------------------------------------GTCAGTGCATGACAGAACTTGG 	164
-------------------------------------------------GTCAGTGCATGACAGAACTTG 	3
--------------------------------------------------TCAGTGCATGACAGAACTTGG 	26077
--------------------------------------------------TCAGTGCATGACAGAACTT 	160
--------------------------------------------------TCAGTGCATGACAGAACTTGGGC 	3
--------------------------------------------------TCAGTGCATGACAGAACTTGGG 	168
--------------------------------------------------TCAGTGCATGACAGAACTTG 	353
---------------------------------------------------CAGTGCATGACAGAACTTGGG 	1
---------------------------------------------------CAGTGCATGACAGAACTTGG 	62
---------------------------------------------------CAGTGCATGACAGAACTTG 	1
----------------------------------------------------AGTGCATGACAGAACTTGGG 	4
----------------------------------------------------AGTGCATGACAGAACTTGG 	311

Overlaps with: MNEST033239
Overlaps with miRBase pre-miRNAs: bta-mir-152 bta-mir-2957 cfa-mir-152
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Sus scrofa	GSM636846	TCAGTGCATGACAGAACTTGG	AGGTTCTGTGATACACTCCGACT	down	2	2

Secondary structure

TCCTCCCGGCCCAGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGGGCCCGGACG
-------------------------------------------------GTCAGTGCATGACAGAACTTGG 	12
--------------------------------------------------TCAGTGCATGACAGAACTTGGG 	15
--------------------------------------------------TCAGTGCATGACAGAACTTGG 	2429
--------------------------------------------------TCAGTGCATGACAGAACTTG 	28
--------------------------------------------------TCAGTGCATGACAGAACTT 	9
---------------------------------------------------CAGTGCATGACAGAACTTGG 	1
----------------------------------------------------AGTGCATGACAGAACTTGG 	14

Overlaps with: MNEST033239
Overlaps with miRBase pre-miRNAs: bta-mir-152 bta-mir-2957 cfa-mir-152
HuntMi prediction: true miRNA