miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCAGTGCATTACAGAACTTTGT

selected species: Danio rerio



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TCAGTGCATTACAGAACTTTGT AAAGTTCTGTGATACACTCCGACT down 1 2


Secondary structure

GGCTTTCCAAGTAAAGTTCTGTGATACACTCCGACTCTGAATGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGT
-------------AAGTTCTGTGATACACTCCGACTC 	1
-------------AAGTTCTGTGATACACTCCGACT 	25
-------------AAGTTCTGTGATACACTCCGAC 	1
-------------AAGTTCTGTGATACACTCCGA 	4
----------------TTCTGTGATACACTCCGACT 	3
-----------------------------------------------CAGTCAGTGCATTACAGAACTTTGT 	1
--------------------------------------------------TCAGTGCATTACAGAACTTTGTTT 	1
--------------------------------------------------TCAGTGCATTACAGAACTTTGTT 	5
--------------------------------------------------TCAGTGCATTACAGAACTTTGT 	189
--------------------------------------------------TCAGTGCATTACAGAACTTTG 	92
----------------------------------------------------AGTGCATTACAGAACTTTGT 	2

Overlaps with: MNEST034321
Overlaps with miRBase pre-miRNAs: dre-mir-148
HuntMi prediction: true miRNA