miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCATGGTCAGATCCGTCATCC

selected species: Arabidopsis thaliana

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM424847-4989	TCATGGTCAGATCCGTCATCC	ATGATGAATCCGACCATGATG	down	2	0

Secondary structure

AAACATTTTCGAAAAGAGAGGCTATAAGCGGGATGATGAATCCGACCATGATGGTGTTGCAGAAATTTATGTATGATGTAGTTATTGTCCAGGGATCGAAACACCATCATGGTCAGATCCGTCATCCCACTTATGTTTTCTTAGGTCAACAAATAT
---------------------------------------------------------------------------------------------------------ATCATGGTCAGATCCGTCATCC 	1
----------------------------------------------------------------------------------------------------------TCATGGTCAGATCCGTCATCCC 	20
----------------------------------------------------------------------------------------------------------TCATGGTCAGATCCGTCATCC 	23
-----------------------------------------------------------------------------------------------------------CATGGTCAGATCCGTCATCCC 	13

Overlaps with: MNEST047157
Overlaps with miRBase pre-miRNAs: ath-MIR842
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM366866	TCATGGTCAGATCCGTCATCC	ATGATGAATCCGACCATGATG	down	2	0

Secondary structure

AAACATTTTCGAAAAGAGAGGCTATAAGCGGGATGATGAATCCGACCATGATGGTGTTGCAGAAATTTATGTATGATGTAGTTATTGTCCAGGGATCGAAACACCATCATGGTCAGATCCGTCATCCCACTTATGTTTTCTTAGGTCAACAAATAT
-------------------------------GATGATGAATCCGACCATGAT 	3
--------------------------------ATGATGAATCCGACCATGATG 	2
---------------------------------TGATGAATCCGACCATGATGG 	2
----------------------------------------------------------------------------------------------------------TCATGGTCAGATCCGTCATCCC 	7
----------------------------------------------------------------------------------------------------------TCATGGTCAGATCCGTCATCC 	18
-----------------------------------------------------------------------------------------------------------CATGGTCAGATCCGTCATCCC 	8

Overlaps with: MNEST047157
Overlaps with miRBase pre-miRNAs: ath-MIR842
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM424848-4990	TCATGGTCAGATCCGTCATCC	ATGATGAATCCGACCATGATG	down	2	0

Secondary structure

AAACATTTTCGAAAAGAGAGGCTATAAGCGGGATGATGAATCCGACCATGATGGTGTTGCAGAAATTTATGTATGATGTAGTTATTGTCCAGGGATCGAAACACCATCATGGTCAGATCCGTCATCCCACTTATGTTTTCTTAGGTCAACAAATAT
----------------------------------------------------------------------------------------------------------TCATGGTCAGATCCGTCATCCC 	10
----------------------------------------------------------------------------------------------------------TCATGGTCAGATCCGTCATCC 	24
-----------------------------------------------------------------------------------------------------------CATGGTCAGATCCGTCATCCC 	14

Overlaps with: MNEST047157
Overlaps with miRBase pre-miRNAs: ath-MIR842
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM518432-13544	TCATGGTCAGATCCGTCATCC	ATGATGAATCCGACCATGATG	down	2	0

Secondary structure

AAACATTTTCGAAAAGAGAGGCTATAAGCGGGATGATGAATCCGACCATGATGGTGTTGCAGAAATTTATGTATGATGTAGTTATTGTCCAGGGATCGAAACACCATCATGGTCAGATCCGTCATCCCACTTATGTTTTCTTAGGTCAACAAATAT
-------------------------------GATGATGAATCCGACCATGAT 	13
--------------------------------ATGATGAATCCGACCATGATG 	3
---------------------------------TGATGAATCCGACCATGATGG 	6
----------------------------------------------------------------------------------------------------------TCATGGTCAGATCCGTCATCCC 	8
----------------------------------------------------------------------------------------------------------TCATGGTCAGATCCGTCATCC 	19
-----------------------------------------------------------------------------------------------------------CATGGTCAGATCCGTCATCCC 	8

Overlaps with: MNEST047157
Overlaps with miRBase pre-miRNAs: ath-MIR842
HuntMi prediction: true miRNA