miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCATTGAGTGCATCGTTGATG

selected species: Arabidopsis thaliana



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TCATTGAGTGCATCGTTGATG TCAGCGTTGCATTCAATTATG up 2 0


Secondary structure

TTGAATGAACATCATTGAGTGCATCGTTGATGTAATTTTACTTATTTTATTCCATTGTTGAATTAATTAAAGAAGTATATATCAGCGTTGCATTCAATTATGTTTTTCTA
-----------TCATTGAGTGCATCGTTGATGT 	5
-----------TCATTGAGTGCATCGTTGATG 	233
-----------TCATTGAGTGCATCGTTGAT 	4
-----------TCATTGAGTGCATCGTTGA 	1
-------------ATTGAGTGCATCGTTGATG 	1


Overlaps with: MNEST040088 MNEST047011
Overlaps with miRBase pre-miRNAs: ath-MIR397b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM366870 TCATTGAGTGCATCGTTGATG TCAGCGTTGCATTCAATTATG up 2 0


Secondary structure

TTGAATGAACATCATTGAGTGCATCGTTGATGTAATTTTACTTATTTTATTCCATTGTTGAATTAATTAAAGAAGTATATATCAGCGTTGCATTCAATTATGTTTTTCTA
-----------TCATTGAGTGCATCGTTGATG 	109


Overlaps with: MNEST040088 MNEST047011
Overlaps with miRBase pre-miRNAs: ath-MIR397b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM304284 TCATTGAGTGCATCGTTGATG TCAGCGTTGCATTCAATTATG up 2 0


Secondary structure

TTGAATGAACATCATTGAGTGCATCGTTGATGTAATTTTACTTATTTTATTCCATTGTTGAATTAATTAAAGAAGTATATATCAGCGTTGCATTCAATTATGTTTTTCTA
-----------TCATTGAGTGCATCGTTGATG 	18
-----------TCATTGAGTGCATCGTTGAT 	1


Overlaps with: MNEST040088 MNEST047011
Overlaps with miRBase pre-miRNAs: ath-MIR397b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM366866 TCATTGAGTGCATCGTTGATG TCAGCGTTGCATTCAATTATG up 2 0


Secondary structure

TTGAATGAACATCATTGAGTGCATCGTTGATGTAATTTTACTTATTTTATTCCATTGTTGAATTAATTAAAGAAGTATATATCAGCGTTGCATTCAATTATGTTTTTCTA
-----------TCATTGAGTGCATCGTTGATG 	662
-----------TCATTGAGTGCATCGTTGAT 	1
-----------TCATTGAGTGCATCGTTGA 	3
-------------ATTGAGTGCATCGTTGATG 	2


Overlaps with: MNEST040088 MNEST047011
Overlaps with miRBase pre-miRNAs: ath-MIR397b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM304283 TCATTGAGTGCATCGTTGATG TCAGCGTTGCATTCAATTATG up 2 0


Secondary structure

TTGAATGAACATCATTGAGTGCATCGTTGATGTAATTTTACTTATTTTATTCCATTGTTGAATTAATTAAAGAAGTATATATCAGCGTTGCATTCAATTATGTTTTTCTA
-----------TCATTGAGTGCATCGTTGATG 	254
-------------ATTGAGTGCATCGTTGATGTAA 	1


Overlaps with: MNEST040088 MNEST047011
Overlaps with miRBase pre-miRNAs: ath-MIR397b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM304285 TCATTGAGTGCATCGTTGATG TCAGCGTTGCATTCAATTATG up 2 0


Secondary structure

TTGAATGAACATCATTGAGTGCATCGTTGATGTAATTTTACTTATTTTATTCCATTGTTGAATTAATTAAAGAAGTATATATCAGCGTTGCATTCAATTATGTTTTTCTA
-----------TCATTGAGTGCATCGTTGATG 	11
-----------TCATTGAGTGCATCGTTGAT 	2
-----------TCATTGAGTGCATCGTTGA 	1


Overlaps with: MNEST040088 MNEST047011
Overlaps with miRBase pre-miRNAs: ath-MIR397b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM518432-13544 TCATTGAGTGCATCGTTGATG TCAGCGTTGCATTCAATTATG up 2 0


Secondary structure

TTGAATGAACATCATTGAGTGCATCGTTGATGTAATTTTACTTATTTTATTCCATTGTTGAATTAATTAAAGAAGTATATATCAGCGTTGCATTCAATTATGTTTTTCTA
---------CATCATTGAGTGCATCGTTGA 	2
-----------TCATTGAGTGCATCGTTGATG 	4159
-----------TCATTGAGTGCATCGTTGATGT 	5
-----------TCATTGAGTGCATCGTTGA 	4
-----------TCATTGAGTGCATCGTTGAT 	6
------------CATTGAGTGCATCGTTGATG 	2
-------------ATTGAGTGCATCGTTGATG 	6


Overlaps with: MNEST040088 MNEST047011
Overlaps with miRBase pre-miRNAs: ath-MIR397b
HuntMi prediction: true miRNA